Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2327 ATGAAGATAACTTTTCATGTAATGTATGCCATTCTAGTTTTTTCATCAACACTTGCACAAATTTCAGCACAGAAAGAAGCAGAATCACTGGTGAGATGGATGAAAAGTTTGAACTCTCCCATGTTGTCTTCATGGAACATCACAAATAACAAGACAAGTCCATGCAACTGGAAAGGAATCAAGTGTAACAATGGTGGAAGTGTTGTTGAGATAAAGCTTCCAAATTCAGGCCTTGATGGAACCCTCAACAGGTTTGATTTCTCTTCTTTTCCTAATCTCACTACACTCAATCTCACCATGAACAACCTTGTTGGAAAAATCCCATCTGAGATAGGAAATTTAACAAAATTGCAAGTTCTTGATCTTAGTAGCAACAATTTCACATATCAAATGCCACCAAAAATAGGTAACCTCTTAGAGCTACAAGTTCTAATCCTATCAAACAATTCATTGTTGCAACAAATTCCATATCAACTTAGCAATCTACAGAATTTAAGAATTCTTGAACTAGGTGGTAACTATTTAAGCAATCCTGACCCAAAATTCAAGGGCATGACATCCCTAACAGACCTTAACCTCACATATAATTCTCTCACAGAATTTCCACCATTTGTTCTTAAATGTCCAAAGCTTGTGTCTCTTGTTCTTTCAGTGAATACTATTGGGAAAGTTCCAATTCAATTGTTCAACAGTCTCAAGAACCTAACAACCCTTGACCTTACACAAATCCAATTAGAGGGTCCAATTCCAACAGATATTAAGAATCTTTCAAAGCTTAAACACCTTGGTCTTGGACTCAACCAGCTAAATGGTACAATTCCAAAGGAGATAGGTCTATTATCATCACTTGAGATTCTTGAACTGCATGAAAATTCCTTCCAAGGACCAATACCATCCACAATTGGAAATCTCAAAATGCTTCAGAGACTTGATCTTCACAGCTCAGGGATAAATTCTAGCATCCCAGATGAAATAGGCTTCTGCACAAACCTTACTTTTATCGATATGTCGGGAAATAACCTCACAGGTTCCTTACCTCTTTCAATGGCTTCACTAACAAGAATCAAAGAGATGGGAATATCTGCTAACTATCTATCTGGAGAACTTCATCCGTCTCTTCTTTCCAATTGGACAGAAATCAGTTCCTTGCAACTCCAAATGAATTATTTGTCAGGAAAACTTCATCCTGAGCTTGGTTTGCTTCAAAATCTTACTCTCTTGTACCTATACTCGAACCGGTTTTCTGGACCAATTCCACCAGAAATTGGAAACTTATCAAGCATAGAAGATCTTGAACTTTCCGACAACAATTTCAATGGTTCTATACCATCAACCATTGGAAAGTTGCAGAGCCTCACCCAGCTAACACTGGCCACAAACCAACTCAGTGGAATCCTTCCTCCTGAAATAGGTGATTTGGAAAGTCTTCAATCCCTTGACCTGAGTGGAAACAACCTTGCAGGGTCTTTGCCATCATCAATAGTTCGTTTGGAAAACCTCAATCTCCTTTATCTTCACAACAACAATTTCTCAGGAAGCATTCCACAAGATTTTGCACCTTCTTTCTTAACCAATTTGACCTTTTCCAACAATAGTTTCTCCGGGAAGCTACCTTCGGGAGTATGCAGGGGAGGGAACCTTATCTACTTAGCTGCCAATCAGAACAATCTAGAAGGTCCAATCCCAGAAAGCCTGAGAAACTGCACTGGACTAATCAGAGTTCGTCTTGAGAAGAACTCTCTTAGTGGAGATATCACGAATGCATTCGGCATATACCCGAATCTGAACTTCATTGATTTAGGACAAAATCAGCTTACTGGTTCATTGACAAATAACTGGGGAGAGTGCAAAAGTCTCTCAAGCTTTAGCATATCTTCCAATAAGATTCAAGGGAACATCCCTCCTGAGCTTGGAAGTTTGCCAAAGCTGCAAAGTCTTGATCTCTCAAACAACAATCTAACAGGAAGCATCCCAGTGAAGCTCTTCAGTCCATCTTCCCAGCTGCTTAAACTAAACATGAGCAACAATAATCTCTCGGGTCAGTTACCGACCAGCATTGGAGCACTTTCACAGCTGCAATTTCTGGATTTATCAGCAAACAGTATGAGAGGGTCAATTCCAAAAGAACTCGGAAACTGCAGAAAGCTTATATCACTGAAGCTGAGTATGAACCAGTTAGATGGCAATATGCCGATTGAGCTTGGGAATTTAGTGGAGTTGCAGCCTCTGTTGGATCTCAGCCATAACTCACTAAGTGGACAGATAATCACACAGCTAGGAAATCTGATAGCCTTGGAAATTTTGAACCTTTCCCATAATCAGCTTTCTGGGACAGTTCCTTCTGCTTTGGAAGGACTAATAAGCCTTCAGTCAGTGGATATTTCTTATAACAAACTTGTAGGTCCCCTCCCGGACCTAGCCGCTTTTCAAAATGCTTCGTCCGAAGCTCTAGCCGGCAATGCAGGTTTGTGTGCTGGTATTGCTAGCAATAGCAAAGCAAATTTGAATCCTTGTGTTGGAAGCAAAAGCAGCAAATCAAATAAACATAAGGTGATCATTGCAGTAGTCATTCCACTTGCTGTTCTATTCATTTTATTAGTTTCCCTTGGAGTCTTCACCCTGCTGCGCTACAAGAGAGTCGATCAAGAAGAAGAGGACAAGAGTGAAGATGGAAAGGACTCACTCTTTGTATGGAATCACAGGAGCATAGTAGAGTTTAAGGACATACGCAAGGCGACTGAGAATTTTGGTGACAAGTACTGCATAGGCATAGGAGGACAGGGCAGTGTATACAAAGCAGTGCTTCCAACAGGTGACATCTTCGCAGTGAAGTGTCTCCACCAAATTGAGGATATAGACTTCTCCGGACACCAGACAAAGAATTTCATGTCTGAAGTTCATGCCTTAACCAATATTCGCCACCGAAACATTGTAACAATGTGTGGTTTTAGTTACTCAGACGGGTCTATATTTTTCATATATGAGCATGTGGAGAGAGGATCTTTGCAGAAGCTGTTGCAGGATGACGAGGAGGCGAAGATGTTGACCTGGAATATCAGGCTGCAGATAATAAAAGGACTTGCAAATGCATTGTCTTACTTGCACCATGATTGCAAGCCCAGCATTGTTCACAGAGACATAACAGGGAACAATATTCTCTTGGACATTGATTATGAGCCTAAACTATCTGATTTTGGGACAGCAAGGTTGCTGAAAGAAGAAGAATCAAATTGGACAGCTCCTGCTGGATCATACGGCTATATAGCACCAGAGCTTGCATTTACCATGAAAGTGACTGAAAAATGTGATGTATATAGTTTCGGAATTGTTGCACTAGAGATTTTGGCAGGGAAGTACCCTCATGAACTACTTTCGTGTCTAGAATCTGGGGGATTTGATCAACACCTTGTGGATTTTTTAGATAAGAGAATTGATCCTCCAACAAGAAATTCTGTTCAACTCCTGGTATTGGTGGCAAGGATGATTCTAAAATGTGTTGATAAAGATCCTATGGCAAGACCCACCATGCACCAAGTATGCCAAGAGTTTTCTTCATCTTCTGATTACTCATCCTCTAACCCGTTGAGAATGATCAAATTAAAAAATTTAATAGACATGTAA 3621 0.4027 MKITFHVMYAILVFSSTLAQISAQKEAESLVRWMKSLNSPMLSSWNITNNKTSPCNWKGIKCNNGGSVVEIKLPNSGLDGTLNRFDFSSFPNLTTLNLTMNNLVGKIPSEIGNLTKLQVLDLSSNNFTYQMPPKIGNLLELQVLILSNNSLLQQIPYQLSNLQNLRILELGGNYLSNPDPKFKGMTSLTDLNLTYNSLTEFPPFVLKCPKLVSLVLSVNTIGKVPIQLFNSLKNLTTLDLTQIQLEGPIPTDIKNLSKLKHLGLGLNQLNGTIPKEIGLLSSLEILELHENSFQGPIPSTIGNLKMLQRLDLHSSGINSSIPDEIGFCTNLTFIDMSGNNLTGSLPLSMASLTRIKEMGISANYLSGELHPSLLSNWTEISSLQLQMNYLSGKLHPELGLLQNLTLLYLYSNRFSGPIPPEIGNLSSIEDLELSDNNFNGSIPSTIGKLQSLTQLTLATNQLSGILPPEIGDLESLQSLDLSGNNLAGSLPSSIVRLENLNLLYLHNNNFSGSIPQDFAPSFLTNLTFSNNSFSGKLPSGVCRGGNLIYLAANQNNLEGPIPESLRNCTGLIRVRLEKNSLSGDITNAFGIYPNLNFIDLGQNQLTGSLTNNWGECKSLSSFSISSNKIQGNIPPELGSLPKLQSLDLSNNNLTGSIPVKLFSPSSQLLKLNMSNNNLSGQLPTSIGALSQLQFLDLSANSMRGSIPKELGNCRKLISLKLSMNQLDGNMPIELGNLVELQPLLDLSHNSLSGQIITQLGNLIALEILNLSHNQLSGTVPSALEGLISLQSVDISYNKLVGPLPDLAAFQNASSEALAGNAGLCAGIASNSKANLNPCVGSKSSKSNKHKVIIAVVIPLAVLFILLVSLGVFTLLRYKRVDQEEEDKSEDGKDSLFVWNHRSIVEFKDIRKATENFGDKYCIGIGGQGSVYKAVLPTGDIFAVKCLHQIEDIDFSGHQTKNFMSEVHALTNIRHRNIVTMCGFSYSDGSIFFIYEHVERGSLQKLLQDDEEAKMLTWNIRLQIIKGLANALSYLHHDCKPSIVHRDITGNNILLDIDYEPKLSDFGTARLLKEEESNWTAPAGSYGYIAPELAFTMKVTEKCDVYSFGIVALEILAGKYPHELLSCLESGGFDQHLVDFLDKRIDPPTRNSVQLLVLVARMILKCVDKDPMARPTMHQVCQEFSSSSDYSSSNPLRMIKLKNLIDM* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2327 1206 PRINTS Leucine-rich repeat signature 762 775 - -
Amo16g2327 1206 PRINTS Leucine-rich repeat signature 643 656 - -
Amo16g2327 1206 Pfam Protein kinase domain 921 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 448 520 IPR032675 -
Amo16g2327 1206 SUPERFAMILY L domain-like 370 659 - -
Amo16g2327 1206 SUPERFAMILY L domain-like 576 824 - -
Amo16g2327 1206 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Amo16g2327 1206 PANTHER - 8 1204 - -
Amo16g2327 1206 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 1204 - -
Amo16g2327 1206 Gene3D Transferase(Phosphotransferase) domain 1 997 1198 - -
Amo16g2327 1206 SUPERFAMILY L domain-like 40 366 - -
Amo16g2327 1206 SMART LRR_sd22_2 473 502 - -
Amo16g2327 1206 SMART LRR_sd22_2 401 433 - -
Amo16g2327 1206 SMART LRR_sd22_2 640 661 - -
Amo16g2327 1206 SMART LRR_sd22_2 328 349 - -
Amo16g2327 1206 SMART LRR_sd22_2 114 140 - -
Amo16g2327 1206 SMART LRR_sd22_2 232 258 - -
Amo16g2327 1206 SMART LRR_sd22_2 162 193 - -
Amo16g2327 1206 SMART LRR_sd22_2 689 710 - -
Amo16g2327 1206 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Amo16g2327 1206 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1042 1054 IPR008266 GO:0004672|GO:0006468
Amo16g2327 1206 SMART LRR_typ_2 304 328 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 114 138 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 401 425 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 689 713 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 497 520 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 256 280 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 762 785 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 449 472 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 162 184 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 185 208 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 640 664 IPR003591 -
Amo16g2327 1206 SMART LRR_typ_2 473 496 IPR003591 -
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 374 447 IPR032675 -
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 521 834 IPR032675 -
Amo16g2327 1206 Pfam Leucine rich repeat 428 486 IPR001611 GO:0005515
Amo16g2327 1206 Pfam Leucine rich repeat 744 799 IPR001611 GO:0005515
Amo16g2327 1206 Pfam Leucine rich repeat 641 701 IPR001611 GO:0005515
Amo16g2327 1206 ProSiteProfiles Protein kinase domain profile. 916 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g2327 1206 SUPERFAMILY Protein kinase-like (PK-like) 895 1181 IPR011009 -
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 180 268 IPR032675 -
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Amo16g2327 1206 Gene3D Ribonuclease Inhibitor 269 373 IPR032675 -
Amo16g2327 1206 Gene3D Phosphorylase Kinase; domain 1 878 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2327 Amo-Chr16 97425817 97429596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2327 12 658 Receptor kinase-like Gene Family AT4G08850 33.638 9.67e-90 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo16g2327 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2327 - - ccaj:109803789 1622.45