Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2310 ATGAATATTTTTTCTTTGATTCATCACCAATTCACGCTACCTGCACAAACTCGCGCGCCTTCTCCTTCGATTCGTCGCTGCTGCTCATCTCTTCTTCAAGGGTTTTCACCTTCGATTCGTGGTCGCTCATCTCTTCTTCACTGTTGCCATTCATCACTGCGCTCACCAACGACCTCTTCTCTGCTCTACTGTGAAGCATCAAGGTTTCCAATGAGGCAAAGCATCGATCCCTTACAAGCGAGTATTATTATTGAAGCACAGCATCTTGAGAAAAATCTGAGTCGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTTGCGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGGGATTACATGATTTATTTCAAAAGTTTGGAAATATCTTGTCCAGCTTTGGGAATTGCTTTGGTGCTTCAAATTGGTTTAGAGGGAGGGATGATAGTGATACTGCTGAGAAGCCACGGAACGAGGTAATAGAATTGAGGTTGTGA 570 0.4246 MNIFSLIHHQFTLPAQTRAPSPSIRRCCSSLLQGFSPSIRGRSSLLHCCHSSLRSPTTSSLLYCEASRFPMRQSIDPLQASIIIEAQHLEKNLSRRAIELKNHSLLHGKVIRVMWSRCDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKFGNILSSFGNCFGASNWFRGRDDSDTAEKPRNEVIELRL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2310 189 Gene3D - 117 164 IPR012677 -
Amo16g2310 189 SUPERFAMILY RNA-binding domain, RBD 95 160 IPR035979 GO:0003676
Amo16g2310 189 PANTHER RNA BINDING PROTEIN 91 158 - -
Amo16g2310 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 156 IPR000504 GO:0003723
Amo16g2310 189 PANTHER POLYADENYLATE-BINDING PROTEIN 91 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2310 Amo-Chr16 95373190 95375239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2310 86 156 Eukaryotic Initiation Factors Gene Family AT2G36660 60.563 3.61e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2310 K13126 - aip:110263767 184.882