Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2308 ATGGGTCACAAGTCCATGTTACAGGAGCTTCTGAAAGAAGAGCAAGAGCCTTTCCTGCTAAACAAGTACATTTCCGATAGGAGAACCCACATGAAGACCACCACTACTACTCTCGTCAACAACAAACAACGCAGCACAACTTTCCCACTCAATCTCTGCAAGAACGCATGCTTCTCCACCTCCACTACCACCACCACCACCAAATCCCCTCTCTTGGAATTCCCATCGCCCAATAATAACAAGAAGCCCATATTCCTTCACATTCCTTCTCGAACCGCCGCGCTTCTTCTCGAAGCCGCTCTCAGGATCCACAAACACAAGAAGACCAATCACGGCTTCGGCCTATTGGGCTCCTTCTTCAGGAGACTAAAGCAGAACCGCCGCAAGCACAAGCTCAAGGTGAGCTCCCTCAAAGATCGAGAAAATGTGATTAATAGATCCTACGAGTTGGGGTTTCGATGTTCATACTCTGTTTGGTCAGAGAGCAACGATGATGAGTCTCTCGACATGGAAACCTCAAGTAGCACTAGTACGAACTTTGATGACCACCACCACCACCATATTATTCACAATGGAGGATTCTTTGAAAGCCCATTCCGTTTTGTTCTTCAAAAGAGCCCCTCCTCCTCCTCCGGCCTCAACACGCCGGAGCTACCTTCACCTCCGCCCTCATCACCACAGACTCCCCACACTACGCAGGACAAAGAAAGTAACGGCGGTGAGAGTGTGCATAAATTCCAATCGGGGGAACTAGAAGAAGAAGATAAGGAACAGTGTAGTCCCGTGTCTGTTCTAGACCCACCCTTCGAGGACGATGACGAAGCGCATGGAAACGACGAGGAGGACGAAAATGAGGAGCATGGTTTCGATTTGGAGTGCAGCTATGCCATAATGCAGAGAACTAAGCAGCAGCTATTGTACAAGCTTCGTAGATTCGAGAAACTCGCGGGGCTAGATCCGGTAGAACTCGAGAAAATAATGCTGGATCAAGAAGAGGAGGAGGATGAAACGGTCATGGAAGATGATGGATATGTATACGAGGCCAGTGAAGCATTATCGTGTAAAGAAAATGGCTTGATAGAACAAGTATTTGAAGCTCTCTTTGAGTCATCAAGACTTCAATTCCCAGAAGGCCTTAAGAGACTTGTATCTGATGTCATTGCAGAGGAAGAGAGGGAAATTGAGTGCTTAGAAGATTATAATAATAGGGACATGGTGGTGAGAAAGGTGTGCAAGAGAATGGAGCTTTGGAAACAAGTGGAGTCAAACACAATTGACATGATGATAGAAGAAGATTTTACAAGAGAGGAAAATGGTTGGAAGAAGAAAAATGTGGATCAGATAAGGGACATGGCTGGGGAGCTTGAACTTGCTATCTTTGGGTTTCTAGTTGAAGAATTCTCAGAGGAGCTAGAATGTTAA 1422 0.462 MGHKSMLQELLKEEQEPFLLNKYISDRRTHMKTTTTTLVNNKQRSTTFPLNLCKNACFSTSTTTTTTKSPLLEFPSPNNNKKPIFLHIPSRTAALLLEAALRIHKHKKTNHGFGLLGSFFRRLKQNRRKHKLKVSSLKDRENVINRSYELGFRCSYSVWSESNDDESLDMETSSSTSTNFDDHHHHHIIHNGGFFESPFRFVLQKSPSSSSGLNTPELPSPPPSSPQTPHTTQDKESNGGESVHKFQSGELEEEDKEQCSPVSVLDPPFEDDDEAHGNDEEDENEEHGFDLECSYAIMQRTKQQLLYKLRRFEKLAGLDPVELEKIMLDQEEEEDETVMEDDGYVYEASEALSCKENGLIEQVFEALFESSRLQFPEGLKRLVSDVIAEEEREIECLEDYNNRDMVVRKVCKRMELWKQVESNTIDMMIEEDFTREENGWKKKNVDQIRDMAGELELAIFGFLVEEFSEELEC* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2308 473 MobiDBLite consensus disorder prediction 205 287 - -
Amo16g2308 473 MobiDBLite consensus disorder prediction 237 260 - -
Amo16g2308 473 MobiDBLite consensus disorder prediction 272 287 - -
Amo16g2308 473 PANTHER OS04G0572500 PROTEIN 2 473 - -
Amo16g2308 473 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1B-LIKE PROTEIN 2 473 - -
Amo16g2308 473 Coils Coil 120 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2308 Amo-Chr16 94988278 94991373 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2308 4 471 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 33.333 2.88e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2308 - - gmx:100814311 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2308 16 94988278 94991373 Amo06g1602 06 52223329 52226502 hybridization
Amo16g2308 16 94988278 94991373 Amo12g3455 12 123747502 123751926 PCT
Amo12g3455 12 123747502 123751926 Amo16g2308 16 94988278 94991373 PCT