Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2261 ATGGAAATGGAGGATCATCATCATCAACACCAACAGTATGGCGGCATCACTGATCTGAGGCAGCTTGTGAGTAACAACGGACCCCGTTCAACACATTTTCCTACTTCCATACCGCCACAGCCCACGGCGGAGCTCTTCCCGGGCCACCCAAACCTCGCGGCTGCGCATCAGCAGCAGCACTACGAGCTGATGATGTTTGGGCGCCAAGTAGCTGACTTAATGCCTCGCTGTCTCCACGACTTTGCTGACGCCAGCAATAATAACACAAGCAGCATCGGTGTTGCCACTGCCACTACTCCCACCACAACCACAAGCGCTTCAACTCCTCCTCTTAGTGGGTTGGGCGGCGCTGAGGCTGTAGGATGCTTAGGTGGAGACGCATCCACTGGAAGATGGCCTAGACAAGAGACTCTTACTCTTCTTGAGATCAGATCTCGCCTTGACCCCAAATTCAAAGAAGCTAATCAGAAAGGTCCCCTCTGGGATGAAGTTTCTAGGATCATGTCTGAAGAGCATGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATCTGTACAAGTATTACAAGAAGACAAAGGAGGGAAAAGCTGGAAGACAAGACGGGAAGCATTACCGATTCTTTCGCCAACTCGAAGCCTTATACGGTGAAAGCAACAGTAACAACAGCAACGCTGCCTCAGCACAAGAAACCAATTTTGGTGGTAGCAACACCCTCCATTACCAAAACAATCCTCATGCTTTCAATTCCCAACATCAGATGAATAACCAAGAAATGCTGCTTCTTGGTTCCCAGAACAGCCTAAGCCTCACCAACTCCACTGAGTTTGAAACCTCTTCTTCGGATGATGATGATCACAATAGCACTGGGGGAGTGAAGGGGAACGATGAGTCCATGGAGAAGAGGAGGAAGAAGAGAGGAGGGAGCAAGAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTTGCAAATGAGGAAGCTTGTGCAGAAGCAAGAAGAGTGGCTTGACAAGCTTATGAAGACGCTGGAACAGAAGGAGAAAGAGAGGGTTCTGAGAGAGGAAGAGTGGAGGAGACAAGAGGCAGCCAGGTTGGAGAGGGAGCACAAGTTTTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCCTTGCACAAGCTGACAGGAACTGATCAGGTAAAGTCTCATCATCATCATCATGATGGGATAATAACTGGTTCCGCAATGCAAAATAAGGACCATAACGAAGATGATGAAAACTGGCAAGAATGTGAGATATCAAGGCTTGTTCAGTTGAGAGCTGAGATGATGGAAACAAGTTTTAGGCATGGTGGTGATGGTTGTTCAGAAGAGGCTTTGTGGGAACAGATAGCAACAAAAATGGCATGTTTTGGGTATGAAAAGAGTCCAGTAAAGTTGAAAGAGAAATGGGAAACAATCAGCAAAGAAAACAACAAGAAGAAGCGGAAGGAGAATAACTCAAACTCAGTACGAAGTAGTAGTTCTTGTTTTTACATTGAAAACAATAACAATGACCATTATTCTTCTTCTTCTTCTCTATATAACAACAACAACAACAACCAAAGTGGTGGTGGATACTGTGATATCAACAATGATCAAAGGCGGCAACAACAATCACCTTCGAATTCCAACGCTAATGCATCAGTTCATCAAGCTGAGAACTGTTTCCCATTCTTGATGAGTTGTGAGGGAGGAACTTTGTGGGACAACTACAGCTTAAAGGTTAATAAACCAAATCAAAATCAGTAG 1794 0.4571 MEMEDHHHQHQQYGGITDLRQLVSNNGPRSTHFPTSIPPQPTAELFPGHPNLAAAHQQQHYELMMFGRQVADLMPRCLHDFADASNNNTSSIGVATATTPTTTTSASTPPLSGLGGAEAVGCLGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGESNSNNSNAASAQETNFGGSNTLHYQNNPHAFNSQHQMNNQEMLLLGSQNSLSLTNSTEFETSSSDDDDHNSTGGVKGNDESMEKRRKKRGGSKSWKVKIKDFIDLQMRKLVQKQEEWLDKLMKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGTDQVKSHHHHHDGIITGSAMQNKDHNEDDENWQECEISRLVQLRAEMMETSFRHGGDGCSEEALWEQIATKMACFGYEKSPVKLKEKWETISKENNKKKRKENNSNSVRSSSSCFYIENNNNDHYSSSSSLYNNNNNNQSGGGYCDINNDQRRQQQSPSNSNANASVHQAENCFPFLMSCEGGTLWDNYSLKVNKPNQNQ* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2261 597 PANTHER - 28 578 - -
Amo16g2261 597 MobiDBLite consensus disorder prediction 282 307 - -
Amo16g2261 597 MobiDBLite consensus disorder prediction 222 252 - -
Amo16g2261 597 MobiDBLite consensus disorder prediction 537 561 - -
Amo16g2261 597 SMART sant 425 491 IPR001005 -
Amo16g2261 597 SMART sant 128 191 IPR001005 -
Amo16g2261 597 Pfam Myb/SANT-like DNA-binding domain 131 217 IPR044822 -
Amo16g2261 597 Pfam Myb/SANT-like DNA-binding domain 427 512 IPR044822 -
Amo16g2261 597 Coils Coil 331 358 - -
Amo16g2261 597 MobiDBLite consensus disorder prediction 274 312 - -
Amo16g2261 597 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 28 578 - -
Amo16g2261 597 ProSiteProfiles Myb-like domain profile. 124 189 IPR001005 -
Amo16g2261 597 Gene3D - 429 494 - -
Amo16g2261 597 Gene3D - 132 194 - -
Amo16g2261 597 CDD GT1 131 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2261 Amo-Chr16 90829663 90833289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2261 9 592 Trihelix Transcription Factor Family AT5G03680 42.971 4.00e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo16g2261 Myb_DNA-bind_4 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2261 - - aip:110263365 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2261 16 90829663 90833289 Amo12g3454 12 123721863 123725437 PCT
Amo12g3454 12 123721863 123725437 Amo16g2261 16 90829663 90833289 PCT