Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2245 ATGCGTTCCAACAACACTTCTTCTTCTTCTTCTTCAGGCAGTAGTGGCACTGGTCGGCACCCTTTGTACCGAGGAGTGAGGCGCAGGAGCAGTGGCAAATGGGTCTCCGAAATCAGGGAGCCAAAGAAACCTACCAGGATTTGGCTTGGCACTTTCTCCACCCCCGAAATGGCTGCTATTGCTTATGATGTCGCCGCTCTTGCTCTTAAGGGTAACGATGCTGCCCTTAACTTCCCCGACTCCGCTTCTTCCCTCCCTGTTCCTGCCTCTTCCTCTGCCCGCGATATTCAAGTTGCCGCAGCCAGTGCAGCTGCTGCTCTCGGAGCCGCCAAAGACTCCATCGAGGGAAGCCGGGGAGCCGCGGCAGGGAATGCCGTTGCGCTGGAGCAAGAGGTGCCGCCGCTCTCCCAAGCCAGGAACACTAATGACAACAATAATGAGTTTGTGGATGAGGATTTGATTTTTGATATGCCTAATGTTCTGCTCAATATGGCTGAAGGAATGCTTCTTAGCCCTCCTCGTTTTCATGTTGCCGATGACTACACTACTGCTCCAGAATACATGCCGGAAGATCCACACCTCTGGAGTTACCCTTATTTCCCATGA 606 0.5314 MRSNNTSSSSSSGSSGTGRHPLYRGVRRRSSGKWVSEIREPKKPTRIWLGTFSTPEMAAIAYDVAALALKGNDAALNFPDSASSLPVPASSSARDIQVAAASAAAALGAAKDSIEGSRGAAAGNAVALEQEVPPLSQARNTNDNNNEFVDEDLIFDMPNVLLNMAEGMLLSPPRFHVADDYTTAPEYMPEDPHLWSYPYFP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2245 201 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Amo16g2245 201 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Amo16g2245 201 MobiDBLite consensus disorder prediction 1 37 - -
Amo16g2245 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 198 - -
Amo16g2245 201 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Amo16g2245 201 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g2245 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2245 Amo-Chr16 89687033 89687638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2245 18 198 AP2-EREBP Transcription Factor Family AT2G36450 62.637 1.77e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g2245 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2245 - - gmx:100799620 244.202