Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo16g2222 | ATGAACATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAGTTCCAACCCCATTTCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCCTCTGCGGTTACACCGTTGACTTCCGCCACCGCGAGGTTCCGAACTAACAGCGACAGGGACTCCGAAAGTAGCGACAGGTACCACCCGCAACCGCCACCGCACCAGGAGCTTGTATCTCAGTACAAGGCCGCGCTAGCTGAGCTCACTTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCAGGAGAGAACCTTTCTGCTGCGAAGGCCATTGCTGGCACCGTTTGTACCAACATTCTAGAGGTTCCAAATGAGCAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCATCAAGGCATACAAACAGGTTGATCCACCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAGGGATACTTTCCTCCGCAGACCCTTCAGATGATTGAAAAGGAACTTGGCTTCACACCTGCAGTCAATGGTTCGGCTTCTTCATCTGCTACACTCAGAAGTGAATCACAGTCACAACGCCCAGCTCATAGCATCCATGTGAATCCCAAGTATTTAGAACGGCAGCGTCTTCAGCAATCCAGCAGGATTAAAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACTCAAATGAGGATTCAGAGAGGCCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTCGATCCTAGGATTAACATGCATCGTATTCAAAGAGATGCATATAACAATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATGGGGGCATGAAAAATAGTTCTGGTATTTCAAGTATTGGAACAACTGGCAGTAGGGTTGCTGAGTTGGGACATGATAAAACTTGGTATAAAGCAGGACTCAGCGTGGCAGAGAACACGTCTAATCAAAGTAATGGTTTCAGTTTGAAGCTTGGTTTTTCGAATCGTGAAGCACCAAAGTCGATGAACTTGGGTGCACATCATCAGCCAACACAAAACTTAACTAGCATACAGAGCAGTGTAGTGCCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGATTGGTGATGGTGCAGCCAGCATTGCCAACAACTTGAATACAGAACGATGGATGGGTGGTGATGATGAGAATTTGGATGGAGATCAATCCCAAATCTTGCACCATGATAGAGAAATATCTACTGCTAGGAAACAATCATTTGCATCTGGGGGGCATTCATCATTGCCATGGCAATTGCAGGAGCAGAGATCGAATGAAAAGTTGAATCTGAGGCCAGGTCACTCGGAAAAATTGTTGTCAGCTTTAGGTTGCTTACCAGCTAATACAAGTTCTTTGGTTGTCAGGATGCCAAATCAGTCTTCCATGCCAAATGCAACCAAAGATATGTCTGAAACTATGGGACAAAAGCAATTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGCAGCAGTCTGCATCATTGCCTGTAACAAAGCTCCACCCTCATCCAACACAAAATTTGTTGGAGCAAGACAATGGGAAGGCTTCTAAAACATCACAATTTCTGGGAGATCTGCAGAGACAATACATTAGAGATCAACCAGCTGCCCTTCCTCCCAATGCTCAAGTTGGTCGTTTGCATAGATCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGAGACTTCTTTTCTGCCAAGGCATCAGCAGCAGCCACTGGTCTCTTCCCAGACTGAAGTTATTGCAAAAACTAAGCCTCTCCACTCTAAAGTCTCTTTGGCCAGTGAAAGTTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGATTCCTCAACAAATCAATTACAAATAGTTTTCCTGGTACAAGTAGTAGTCTAGTTACAAAGAATCTTCCATCTGACTTAGGGGTTTGCCCAGCTCTATCAGGTAGACCCTCGTCTGCCACATTAATTTCTTCGGTATCTGCAGTTGCATCACCGTCAACATTAGTTCCTCCAGATGACGATTCTTCTATTCTGGATAACATATCACAAGCAAATACTGGACAGAAACCAAAGGTCTCTACAAAATTACCAACTTCCTCTAACATGAGCACTGTGTCAGCTCCAACCTCAACCGCTAGAAAAAACAATTCCTTGAATCCCATTGCAAACCTTTTAAGCTCACTGGTTGCAAAAGGTTTGATATCTACAGATTCGGAGTCATCGACTAAGGTACCAACAGAGGCATTGGTTCAATTGGAAGCCCGTACTGAAAGCATTACTGCCAGTAGCTCATTGCCAGTTCCTTCAGTTACTGGTTCCACAGTTCTCCCAGTAACATCCTCTAAAGTTGTGGAAGATGATGCAAAAGCCTCCCTGATCGTAAGTCAATCAACCAACACCAAAATAAGGAATATCATCGGCTTTGATTTTAAGCCTGATATAGTTCGAGAGATGCATCCCACTGTAATCAAGGGATTATTGGATGATAGTCAGCATCATTGCAGATTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTTTGCACGAGAAAGAGAGCAACATGGTCTAATTAGAGCATCCAGAAAATGGTATGAGAATTGGTTTCTGTCTGAGCCTAGTGATTCTGTAGACGATTATTGCGAGGAAACAGACAGGAGTCCATTTGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGTGATCTGTTTGAAGATGTGTACTGTCAAGAGAGGGATGAATGGATGTTCAAAGGTGCTGTTTACATAAACAACTTAGATAGAAATGGTGAGATGGAAAGTAGAAATGTGGGGCCAATTGTTCATGCTAAATGTTTATCTGAGAACTCAGTAGCTGGCGGCATCAAGATGGAACAGGACTGA | 3084 | 0.4413 | MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFRTNSDRDSESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSMRHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLERQRLQQSSRIKGVANDTTRAILNSNEDSERPSRVLGASRPWLDPRINMHRIQRDAYNNSVPEKSLAESYGGMKNSSGISSIGTTGSRVAELGHDKTWYKAGLSVAENTSNQSNGFSLKLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASIANNLNTERWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNEKLNLRPGHSEKLLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPTSVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNAQVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQSKSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAVASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTARKNNSLNPIANLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSKVVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLKQEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPADESQCLCVLCGDLFEDVYCQERDEWMFKGAVYINNLDRNGEMESRNVGPIVHAKCLSENSVAGGIKMEQD* | 1028 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo16g2222 | 1027 | ProSiteProfiles | CID domain profile. | 79 | 207 | IPR006569 | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 214 | 238 | - | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 61 | 75 | - | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Amo16g2222 | 1027 | Gene3D | - | 76 | 204 | IPR008942 | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 618 | 633 | - | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 28 | 60 | - | - | |
Amo16g2222 | 1027 | SMART | 558neu5 | 82 | 204 | IPR006569 | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 588 | 633 | - | - | |
Amo16g2222 | 1027 | Pfam | CID domain | 88 | 198 | IPR006569 | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 509 | 548 | - | - | |
Amo16g2222 | 1027 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 889 | 909 | IPR013087 | - | |
Amo16g2222 | 1027 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 3 | 1023 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 720 | 769 | - | - | |
Amo16g2222 | 1027 | SUPERFAMILY | ENTH/VHS domain | 79 | 208 | IPR008942 | - | |
Amo16g2222 | 1027 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 3 | 1023 | - | - | |
Amo16g2222 | 1027 | CDD | CID_Pcf11 | 84 | 196 | - | - | |
Amo16g2222 | 1027 | MobiDBLite | consensus disorder prediction | 214 | 231 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo16g2222 | Amo-Chr16 | 86342909 | 86349411 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo16g2222 | 77 | 407 | C2H2 Transcription Factor Family | AT4G04885 | 38.261 | 9.57e-54 | 200 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo16g2222 | K14400 | - | gmx:100788958 | 1079.7 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g2222 | 16 | 86342909 | 86349411 | Amo16g2222 | 16 | 86342909 | 86349411 | ECH | |
Amo16g2222 | 16 | 86342909 | 86349411 | Amo12g3153 | 12 | 120185869 | 120189433 | PCT | |
Amo12g3153 | 12 | 120185869 | 120189433 | Amo16g2222 | 16 | 86342909 | 86349411 | PCT |