Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2213 GATCCACTTTGCTTAAAACTGAATCTCAAAAACTACTACATACTCTCAACCTTATTAGCTATAGCAGCCACTGATTGTTGCAACAAGAGGCATAATATTATACCTTCTACTATGGACGCCAATGTATCCACTAAACTTGAATCAGAAGAAACTTCTGAGGAGCTCAAATCATCAGAAACTCAGGCATCCAAGAAAAGGAAAATGGTTGAGAAAACTGTTGTGAGGGTGAGGATAGGAGAGGGAAACAATATCAGCAGACTGAAGAATGAAGGGCTACCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGGTCTCCATATCCAAGGGGTTATTACAGATGCAGCACGTCAAAGGGTTGTTCAGCGAAGAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATACACCTCTACACATAATCACCCTTCTCCTGATGCAATAATCTCCACCCAGAATTTATCACAAAAACCAAAAGAACAAGAAGCTGGAGAAACCACAGAAGAAGAACTATCAAAGGTGGAAGAACAAGAACAAGAACATGAACATGAGCATGAACAGGTTGAAGAAGAACACAGCACGGATCATGAGAAGCCAAGTACTACTACTGTGTCTATGGCCACGGCTGATGAGAAGAGTTTCCATTACTTGCAGTCTCCAATAAGCAGCCATGAAGATATTGTTGTTGTAGACCAAGAAGATCCATTCAAGCTAAGCAGTGAGAAAAGCCATGAAAGAATAGATCTTTTGTTAGAAGAGGAAGAGCCACTATGCTATGCACAGATCAAGAACTTGACAACGAAAAAATCAGATGAACTTGATTTCTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCACCTTTCTTGCACTTCACGAGGAGCATTTTATCCGATGAAAGGATTCCCGTTTTTCCTTCTTGA 948 0.4082 DPLCLKLNLKNYYILSTLLAIAATDCCNKRHNIIPSTMDANVSTKLESEETSEELKSSETQASKKRKMVEKTVVRVRIGEGNNISRLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPSPDAIISTQNLSQKPKEQEAGETTEEELSKVEEQEQEHEHEHEQVEEEHSTDHEKPSTTTVSMATADEKSFHYLQSPISSHEDIVVVDQEDPFKLSSEKSHERIDLLLEEEEPLCYAQIKNLTTKKSDELDFFDELEELPMSSPFLHFTRSILSDERIPVFPS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2213 315 Coils Coil 173 200 - -
Amo16g2213 315 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 44 300 - -
Amo16g2213 315 ProSiteProfiles WRKY domain profile. 88 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2213 315 SUPERFAMILY WRKY DNA-binding domain 89 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g2213 315 SMART WRKY_cls 93 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2213 315 MobiDBLite consensus disorder prediction 170 207 - -
Amo16g2213 315 MobiDBLite consensus disorder prediction 147 213 - -
Amo16g2213 315 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 44 300 IPR044810 GO:0003700
Amo16g2213 315 MobiDBLite consensus disorder prediction 147 169 - -
Amo16g2213 315 Gene3D WRKY domain 80 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g2213 315 MobiDBLite consensus disorder prediction 46 66 - -
Amo16g2213 315 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2213 Amo-Chr16 85715305 85717628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2213 64 154 WRKY Transcription Factor Family AT2G34830 68.132 6.07e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g2213 WRKY 2.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2213 - - adu:107492378 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2213 16 85715305 85717628 Amo16g2213 16 85715305 85717628 ECH