Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2212 ATGCTTAGGTCTATTGTGCCAAAGATTAGCAAGATGGATAGGACTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGTGGATTAATGATCTTCACAATGAATTGGAGTCAACTCTACCTGGTTCTTTGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCTGCAAACCCTTCCGTGCCAGGTGAAAGAGGAACTGTATCTTGGTGTCTTGCCAAGCCCCAAAAACCAACTTGCAAAGGTAAATCTTTCTCTATGA 279 0.4516 MLRSIVPKISKMDRTSILGDAIDYLRELLQWINDLHNELESTLPGSLLQSSTTSLQPLTPTLQTLPCQVKEELYLGVLPSPKNQLAKVNLSL* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2212 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 28 IPR011598 GO:0046983
Amo16g2212 92 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 90 - -
Amo16g2212 92 Gene3D - 1 62 IPR036638 GO:0046983
Amo16g2212 92 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 90 - -
Amo16g2212 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 49 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2212 Amo-Chr16 85301722 85302245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2212 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 72.826 1.16e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2212 - - ahf:112779231 126.716