Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2153 ATGGACAAGGTTCCTCTTCTTATTCTTACTTTGGCATTGGCGTTTATGTGCTTCAAATGCGAGAGTGCACCACAAAATGATACACACGCACTCACCAAATTCCGCCTCCAAACCGACGCACACGCCTCTCTCCTAACAAATTGGACAGGCGCCGATGCTTGCGCCGCGGCCTCCGCTTGGCGCGGCGTCGAGTGCTCCCCAAACGGCAGAGTGGTGGCACTCTCCCTCCCTTCCCTCAATCTCCGAGGCCCCATCCATTCCCTTTCATTACTCTCCTACCTCCGATTCCTTGATCTCCACGACAATCGCCTAAACGGCACCGTTTCCACTCTTTGCAACTGCACCGACCTCGAACTCCTCTATCTCTCCGGCAACGACTTTTCCGGCGAGGTTCCTCTGGAGATTTCCTCCCTCAGGCTCCTCGTGAGGCTTGACATCTCCGATAACAACCTCCGAGGACCGGTTCCCAAGGAAATTTCAAGTTTAACTCACCTCCTCACGCTCCGCCTCCAGAACAACGCTCTTTCAGGCGAAGTCCCCGATTTCTCTTCTTTCCTCGTTAACCTCAAGGAGCTCAACATAACCAATAACGAACTCGTCGGACACTTACCGAATTCCATGCTCAACAGGTTTGGTATTGCAAGCTTCGCTGGGAATGGCGCACTTTGTGGTGATTCACCACTGCCAAAATGTTCCTCCACCGAGACTCCTTCTCCTTCGTCCTCTTCTGATAACAAAACTGGTCCTTCAAACCCGAGCGTCATACCGAAAACGAGTAGCGTAGTCGCAGTTCCGAAGAACCCACCATCACGGAAAGGTTTAAGTCCGGGGGTGATCGTGGCAATTGTAGTGGCGGTTTGCGTGGTGTTTCTTGTGGTTGTCTCTTTCACCGTGGCGCACTGCTGCGCCGGTGGGAGAACCTCAAACTCAATGGTTGGGAGTGAAAGCGGCAAGAGGAAGAGTGAGAGCAGCTACGGGAGCGAGAAGAAGGTGTACGCTAGTGGCAGCGGGGCAGAAAGGGACAGTGATGGAACGGTGGACACTGAGCGGAGCAGGCTGGTGTTCTTCGACAGGAGAAGCCAGTTTGAGCTGGAGGATCTGCTTCGCGCATCGGCAGAGATGCTAGGGAAGGGGAGCTTGGGGACTGTGTATAGGGCGGTGCTGGATGACGGGTGCACGGTGGCGGTGAAGAGGCTGAAGGATGCGAACCCTTGTGAGAGGAGCGAGTTTGAGCAGTACATGGATGTTGTGGGGAAGATGAAGCACCCAAACATTGCGAGGCTCAGAGCGTTTTACTATGCCAAGGAAGAAAAGCTTCTTGTCTATGATTATCTTCCCAATGGAAGCTTGCATACACTTCTTCATGGGAACCGTGGAGCAGGAAGAATCCCATTAGATTGGACGACAAGAATAAGCCTGGTGTTAGGAGCAGCCAGAGGACTAGCTCGCATTCATGCAGAGTACAGTGCTGCCAAGATCCCTCACGGCAACATCAAATCTTCCAACGTCCTTCTCGACAAGAACGGCGCTGCATGCATCTCCGACTTCGGCCTCTTCCTCCTCCTTAATCCCGTCCACGCCGTAGCCAAGTTGGGCGATTACAAAGCACCGGAGCAATCAGAACACAAGAAACTTTCCCAGCAAGCCGATGTCTACAGCTTCGGCGTCTTGATCTTGGAGGTTCTAACTGGCAAAGCACCGTCTCATCAGCATCCTTCCATGCCGCGGCCTCGGACGGAGTTGGAGGAACCACACTTGGATCTTCCCAAATGGGTTCGTTCCCTTGTGAAGGATAGTGAGGAGTGGAACGCGGAGGTGTTTGATCAGGAACTGCTGAGGTACAAGAACATTGAGGATGAGCTTCTCGCCATGATGAATGTGGGGTTGGTTTGTACGGAATTGGAGCCTGAGAAGAGGCCAACTACGTTGGAAGTTGTGAAGATGATTGAGGATATCAGGGTGGAACAATCGCCTCTTGTGGAGGATTTTGATGAGTCGCGCAATTCGCTTTCGCCTTCCATTCCCACAACTGAAGATGGCATGGCCTAG 2049 0.529 MDKVPLLILTLALAFMCFKCESAPQNDTHALTKFRLQTDAHASLLTNWTGADACAAASAWRGVECSPNGRVVALSLPSLNLRGPIHSLSLLSYLRFLDLHDNRLNGTVSTLCNCTDLELLYLSGNDFSGEVPLEISSLRLLVRLDISDNNLRGPVPKEISSLTHLLTLRLQNNALSGEVPDFSSFLVNLKELNITNNELVGHLPNSMLNRFGIASFAGNGALCGDSPLPKCSSTETPSPSSSSDNKTGPSNPSVIPKTSSVVAVPKNPPSRKGLSPGVIVAIVVAVCVVFLVVVSFTVAHCCAGGRTSNSMVGSESGKRKSESSYGSEKKVYASGSGAERDSDGTVDTERSRLVFFDRRSQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCERSEFEQYMDVVGKMKHPNIARLRAFYYAKEEKLLVYDYLPNGSLHTLLHGNRGAGRIPLDWTTRISLVLGAARGLARIHAEYSAAKIPHGNIKSSNVLLDKNGAACISDFGLFLLLNPVHAVAKLGDYKAPEQSEHKKLSQQADVYSFGVLILEVLTGKAPSHQHPSMPRPRTELEEPHLDLPKWVRSLVKDSEEWNAEVFDQELLRYKNIEDELLAMMNVGLVCTELEPEKRPTTLEVVKMIEDIRVEQSPLVEDFDESRNSLSPSIPTTEDGMA* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2153 682 Pfam Protein kinase domain 373 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g2153 682 Gene3D Ribonuclease Inhibitor 90 238 IPR032675 -
Amo16g2153 682 Gene3D Ribonuclease Inhibitor 20 89 IPR032675 -
Amo16g2153 682 SUPERFAMILY L domain-like 25 209 - -
Amo16g2153 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 673 - -
Amo16g2153 682 MobiDBLite consensus disorder prediction 661 682 - -
Amo16g2153 682 MobiDBLite consensus disorder prediction 230 272 - -
Amo16g2153 682 ProSiteProfiles Protein kinase domain profile. 369 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g2153 682 PANTHER LRR RECEPTOR-LIKE KINASE 6 673 - -
Amo16g2153 682 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Amo16g2153 682 MobiDBLite consensus disorder prediction 308 345 - -
Amo16g2153 682 Gene3D Transferase(Phosphotransferase) domain 1 445 670 - -
Amo16g2153 682 MobiDBLite consensus disorder prediction 230 265 - -
Amo16g2153 682 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Amo16g2153 682 SUPERFAMILY Protein kinase-like (PK-like) 373 649 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2153 Amo-Chr16 80145691 80148261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2153 25 678 Receptor kinase-like Gene Family AT2G36570 63.705 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo16g2153 Pkinase 1.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2153 - - gmx:100808402 927.932