Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2148 ATGGAGAATGATGGCAAAGAGTCGTATAAAGATGGTGATCAATCTGAAGATTTAAGTGTTGAGTATGAGTGCAGTTCTGATGAAAGTGATGATATGGTGGATGTAACTGTAGATGAAGTTGAGGAAGATATAATTAATGCTGGTGGTTTGGAAAAGTTGATAACTGATTTGACCATCGAAGACATATGGGGATTGGTGTTTGATACAGAATCTCATGTTTGTGAATTTTATGCCAAGTATGCCAGGTGCTATAGATTTGTGTCCCGAAAAGACTTGAAGACGGTGGATGCTAATGGCAACATTAATACAAGACAGTTGGTTTGCAATAAAGCAGGAGAAAGACATTGGAAGCACCTTAAAAGGGACAATCGGCAAAGGGAACATAGGGCAATTACTCGTGTCAACTGCAGGGCGAGGATTCGGTTCATTCGTCACTATAGAACGGGTAAGTGGAAAGTCAGTGTCTTTGAGAGTGAACACAATCATCCACTGTGTCCACCTAAGTTCAGACATCTTATTATCGCGAATTGTGGGCTTGATGAGGCCGATAAAACACAAGTAGACAGCTTGCGAGCATGTGTAAGGCATTACCGAAACAACCATCTTACTGCTGACTTTGAAACCTTTTATAAGTTTCCTGTTTTGACTACGTGCTTGGAAAGTTTTGAGAAACAAGCTGCTGAACTTTATACTAGAAATATTTTCAAACTTGTGAAAGATGAGATAGAAGCAGCAGGTGCCTTAAATGTGACTGAATACCCAAACAGTGGAGACATTGTTGAGTACAACACGAGTGAGTATTTTAATCAGCAATGGGAATTTAAAGTATCTTACAATAAAGGCAAGGACCTGTTTGCGTGTGAGTGCAGGCTATTTGAGATTCGTGGATTACCGTGTTCCCACATCTTTGGAGTCTTGAAGCATCGCAATAAAAAATGCGTCCCAACATCTCTTATCCTGAAAAGATGGACAAGAGATGCAAAGAACACCGCTGATGATATAGTGCCCACACTTAGATGCGGTGCAATGTCATCTATTTGTTGGAAGCTTTGTGATATTTCTTCCAAAAATTCAGCTGACTATAGGGAAATCTCAGGTGAGTTACTTAAGCTAATTTCGAAGGTGCAAAATAAAGGTGATGCACAAGCGAGGCTTTCCCCCACGTCAGCGCTAATAGGTGATCCAGCTGTTGTGAAGTCAAAAGGGGCTCCAAGAAAGGTTCCAAAAGGCCAAAAGAGGCGAAGATGTTCACATTGTAAGTTAAGCAGGCATTTCGTTAGGACATGTCTATTACTCGCCAAGGAGGACTCCCGTGCCGAATACTCAAATGCTGAAGATGAACCAATGGTTGAAGAATGTGATGCCAATAAACAGACTCCCTCTCAGAACACAAAATCAGTAGAAAATACACCTGTGCACAATAACAATAATTTTAAATTCAAGGGTTGTGGAAGCAAGAAGTCTGTATCTAAATTGACAGAGACACCGAAGATTAGAGCAAATGGCAAAAAAAGTTGA 1518 0.4058 MENDGKESYKDGDQSEDLSVEYECSSDESDDMVDVTVDEVEEDIINAGGLEKLITDLTIEDIWGLVFDTESHVCEFYAKYARCYRFVSRKDLKTVDANGNINTRQLVCNKAGERHWKHLKRDNRQREHRAITRVNCRARIRFIRHYRTGKWKVSVFESEHNHPLCPPKFRHLIIANCGLDEADKTQVDSLRACVRHYRNNHLTADFETFYKFPVLTTCLESFEKQAAELYTRNIFKLVKDEIEAAGALNVTEYPNSGDIVEYNTSEYFNQQWEFKVSYNKGKDLFACECRLFEIRGLPCSHIFGVLKHRNKKCVPTSLILKRWTRDAKNTADDIVPTLRCGAMSSICWKLCDISSKNSADYREISGELLKLISKVQNKGDAQARLSPTSALIGDPAVVKSKGAPRKVPKGQKRRRCSHCKLSRHFVRTCLLLAKEDSRAEYSNAEDEPMVEECDANKQTPSQNTKSVENTPVHNNNNFKFKGCGSKKSVSKLTETPKIRANGKKS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2148 505 MobiDBLite consensus disorder prediction 455 495 - -
Amo16g2148 505 MobiDBLite consensus disorder prediction 1 30 - -
Amo16g2148 505 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 199 330 - -
Amo16g2148 505 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 23 184 - -
Amo16g2148 505 ProSiteProfiles Zinc finger SWIM-type profile. 274 310 IPR007527 GO:0008270
Amo16g2148 505 MobiDBLite consensus disorder prediction 441 505 - -
Amo16g2148 505 SMART 26again6 285 312 IPR006564 GO:0008270
Amo16g2148 505 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g2148 505 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Amo16g2148 505 Pfam SWIM zinc finger 287 309 IPR007527 GO:0008270
Amo16g2148 505 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 184 IPR031052 GO:0006355
Amo16g2148 505 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 199 330 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2148 Amo-Chr16 79912210 79914857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g2148 FAR1 3.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2148 - - ahf:112778948 546.969