Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2130 ATGGGGCTTCGAGACATAGGAGCATCACTTCCACCAGGGTTCAGATTCTACCCGAGTGATGAGGAATTGGTTTGCCATTATCTTTATAAGAAGATCACAAACCAGCAACTTCTTAAAGGCACTCTTATTGAGATTGATTTACACATATGCGAGCCATGGCAGCTTCCAGAGGTGGCAAAGCTAAATGCAAATGAATGGTACTTCTTCAGCTTCAGAGACAGGAAATATGCGACGGGGTTCAGAACGAACAGAGCGACGACAAGTGGTTATTGGAAAGCAACGGGGAAGGATCGAACGGTGCAGGATCCACTTACGCAAGAGGTTGTAGGGATGCGGAAGACTCTGGTGTTCTACCGGAACAGAGCTCCCAATGGCATCAAAACTGGCTGGATCATGCATGAGTTTCGGTTGGAGACCCCACACATGCCCCCTAAGGAAGATTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGAAAACAGTGGCAAACTTATCATGTATGATTCCATTTCCACACATCATGAATCATCAAACTCTATGGCATTGGTATCAACCCATCTTTTGAACCCCATCAACAACCATAATGCCATGAATAATTTCCTTCATCACTTCTCATCATCAAGGGATGATAGTCAAACAAATAACGCCAATAATAATAATAATAATAATAGTCCCAAGGGTTATGATGGATATGGCTTCATATGGGATCACATGGATCTTGAAGATCATAGTGTGCCCTCATCAGATTTCCAGGTCGACAATAATAATAATAATAATAATATTGCATTGCTATAA 798 0.4211 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNQQLLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPLTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSGKLIMYDSISTHHESSNSMALVSTHLLNPINNHNAMNNFLHHFSSSRDDSQTNNANNNNNNNSPKGYDGYGFIWDHMDLEDHSVPSSDFQVDNNNNNNNIALL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2130 265 MobiDBLite consensus disorder prediction 205 226 - -
Amo16g2130 265 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 248 - -
Amo16g2130 265 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 248 - -
Amo16g2130 265 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Amo16g2130 265 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Amo16g2130 265 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Amo16g2130 265 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2130 Amo-Chr16 78087890 78092001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2130 6 205 NAC Transcription Factor Family AT1G56010 50.000 2.01e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g2130 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2130 - - ahf:112754075 379.022