Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2129 ATGTTGATCATCGCTGTTGCTGCACTGACCATCGCTCTTCTTCACCATTCTTCTCATCATCGTCTTCTCTGTGCTCACATCGTTGAGTATCTAGGTCTCAGCTTGGACAAAGGGAAAGGAGCCGATAGAGCAGCAGCACCAGGAGTAGGCTTCTTGAAGCCACCAAAAGAGGCCTCCGGTAGCGGCAAGCACTTTCGCGATGATGTCCTTGATGCCAGAGCTAAGAATGGTTTTGAGTTCCGAACTGGAACTAAAATACAATTGCATGTGGCAGTTTTTCATGGCCAACCAATGCCTACTACTATTCCGGCAGCTCCACATCCTCTAACAATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGACCCACACAGTATAGCTGAACGGTTGCGCAAAGAAAGAATAGCAGAAAGAATCAGGGCTCTACAAGAACTAGTTTCAAGTGTCAACAAGTTTTTGCTCTGTTTGCATGACCGCCCTCTGTTTCATTAA 498 0.4779 MLIIAVAALTIALLHHSSHHRLLCAHIVEYLGLSLDKGKGADRAAAPGVGFLKPPKEASGSGKHFRDDVLDARAKNGFEFRTGTKIQLHVAVFHGQPMPTTIPAAPHPLTMRPRVRARRGQATDPHSIAERLRKERIAERIRALQELVSSVNKFLLCLHDRPLFH* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2129 165 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 28 153 - -
Amo16g2129 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 152 IPR036638 GO:0046983
Amo16g2129 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 165 IPR011598 GO:0046983
Amo16g2129 165 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2129 Amo-Chr16 77740008 77742825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2129 31 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 59.677 7.41e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2129 - - ahf:114924986 229.565