Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2116 ATGGCATCGGTTGCTAATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCGAAAATTACTTACTTGACAGAGAGCGAGTCTAAAAACCTCGAAGATGGTTATAAATGGCGCAAGTACGACAAAAAATCATTCAAAAAGAGCCCTTTCCTAAGAAGCTACTATCGTTGCACTGCAATTGGTTGTAATGCAAAGAAGAGAATGGAGCGGTACGTGGATGATCCCACCCATGTCCTAACCACCTATGTGGGTTTGCACGCTCACGATTTGCCACCAATCCTCACCCCTCTATCAAGATCTTTCAACCTCTACAATAGCTCCACCGTTAGCCCCAAATTTAGCAGAGGAAGCGGTGTACAAAAACTTGTACTTTCAGATGCAAGTGCAGGTGCAAGGAAAAGAAAGCATGCCAATAACATTATTACTAGTGTTAATGTTAGAACTGACAGTGATAGTTGTGTTAATGACATTGGCTCAAATGAGGATATTGGTACCGGACTGCTTGAGGATATTGTTAATTTGTTGAAACTTCGAGCATCGACGATAGCATCGGTTGCTGATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCAAAAATTACTTACTTGACAGAGAGCGAGTCTGAAAACCTCGAAGATGGTTATAAATGGCACAAGTATGGCAAAAAATCACTCAAAAAGAGCCCTTTCCCAAGTGCAATTGGTTGCAATGCGAAGAAGAGAGTGGAGCGGTACATGGATGATCCCACCCATGTACTAACCACCTATGTGGGTTTGCATGCTCACAATTTGCCACCAATCTTCCTTCCTCCATCAAGATCTTTCAACTTCTACAATAACTCCACCGTTAGTCCCAACCTTTGTAAAGGAAGCAGTGTAAAAAAATCTGTACTTTCAGATGCAGGTGCAAGTGCAAGGGAAAGAAAGCATGCCAATAACACTATCACTAGTGTTAATGTTAGAACTGACAGTGATAGTTGTGTTAATGACGTTGGCTCGATTGAGGATATTGGTACCGGACTGCTTGAGGATATTGTTAATTTGTCATCAATATCACCTCATTATCAACATTATCAACCAACATCTCTATAG 1107 0.4029 MASVANTMSMNNKRNKNNLSKITYLTESESKNLEDGYKWRKYDKKSFKKSPFLRSYYRCTAIGCNAKKRMERYVDDPTHVLTTYVGLHAHDLPPILTPLSRSFNLYNSSTVSPKFSRGSGVQKLVLSDASAGARKRKHANNIITSVNVRTDSDSCVNDIGSNEDIGTGLLEDIVNLLKLRASTIASVADTMSMNNKRNKNNLSKITYLTESESENLEDGYKWHKYGKKSLKKSPFPSAIGCNAKKRVERYMDDPTHVLTTYVGLHAHNLPPIFLPPSRSFNFYNNSTVSPNLCKGSSVKKSVLSDAGASARERKHANNTITSVNVRTDSDSCVNDVGSIEDIGTGLLEDIVNLSSISPHYQHYQPTSL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2116 368 ProSiteProfiles WRKY domain profile. 211 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 195 353 - -
Amo16g2116 368 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 175 IPR044810 GO:0003700
Amo16g2116 368 SUPERFAMILY WRKY DNA-binding domain 28 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 SMART WRKY_cls 33 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 SMART WRKY_cls 216 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 Pfam WRKY DNA -binding domain 34 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 Pfam WRKY DNA -binding domain 217 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 12 175 - -
Amo16g2116 368 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 195 353 IPR044810 GO:0003700
Amo16g2116 368 Gene3D WRKY domain 201 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 Gene3D WRKY domain 18 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 ProSiteProfiles WRKY domain profile. 28 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g2116 368 SUPERFAMILY WRKY DNA-binding domain 211 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2116 Amo-Chr16 76745358 76748295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2116 1 270 WRKY Transcription Factor Family AT1G13960 30.314 2.46e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g2116 WRKY 1.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2116 - - aip:107626999 359.762