Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2107 ATGCCAACGGCAACAAACAGTATTGAAAAAGAAGAAGAAGAAACAGGGATAAAGGGGGATCAAAGTTCAACGAAGTGCCAAGACTGTGGGAACCAAGCGAAGAAGGAGTGTTCATATTGGAGGTGCAGAACATGCTGCAAGAACAAAGGATTCCATTGTCAAACCCATATCAAGAGCACTTGGGTCCCCGTTGACCGAAGGCGCCACAGGGAAGTAAATAACCACTTTCAGTTGCACCACCCACATATCTCCAAAAAGCACAAGCACTTCTACTCACCATCACCAGGTGTAGAGGACAAGTTAAAGTTGCCATCTGCTACGAATTCCATGGCTATATTTCGGCGCGTTGAGGTTAGGTCAATGGATCATGCGGTTAACGAAATTGGCTATCAAACATGTGTCAACATTGGAGGACATGTATTTAGTGGTCTTCTATATGATCATGGCCCTGCTGCTGTTGCTGCTGCTCCTTTTCTTGATCATCATCATCAACAGAATCTCAATCATGGTGCAAGTATGGGTCCAGTTGATGATGTTGATGAACCTTTCTTGCCTCCACCACCACTTTCAGACCCGCTACGTACGCCCTACTTCTCATTTCCAAAACCATAG 612 0.4526 MPTATNSIEKEEEETGIKGDQSSTKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHIKSTWVPVDRRRHREVNNHFQLHHPHISKKHKHFYSPSPGVEDKLKLPSATNSMAIFRRVEVRSMDHAVNEIGYQTCVNIGGHVFSGLLYDHGPAAVAAAPFLDHHHQQNLNHGASMGPVDDVDEPFLPPPPLSDPLRTPYFSFPKP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2107 203 PANTHER BNAC01G23660D PROTEIN 19 154 - -
Amo16g2107 203 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 25 67 IPR006510 -
Amo16g2107 203 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 154 IPR007818 GO:0003700|GO:0006355
Amo16g2107 203 MobiDBLite consensus disorder prediction 180 194 - -
Amo16g2107 203 MobiDBLite consensus disorder prediction 165 203 - -
Amo16g2107 203 Pfam Domain of unknown function (DUF702) 23 151 - -
Amo16g2107 203 MobiDBLite consensus disorder prediction 1 29 - -
Amo16g2107 203 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 103 150 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2107 Amo-Chr16 75767953 75769445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2107 25 199 C2H2 Transcription Factor Family AT2G21400 41.989 4.42e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo16g2107 DUF702 6.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2107 - - aip:110269564 191.43