Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2103 ATGGAACCACTTAAGGAGGGTGTGTTTTCCGGTTCAACCGGGAACACAAACTCCGATACACCGGTAACTACCCAGTTTCCACCCCAGGTGATGAACTTGAACTTTGGAAACCTTGGAGGAGGACCGCAACCACCACCACTACCACCACAACCGCAACCACAGCCACCACGGGAACAACCACAAGCGCCACCAGGCACAGCTACAATGTCACCGGCAACAACAGGAACAGGTGGTGCTTCGGGGCAAGGGAGTTTGGAGTTGTTTGGGAAGAAGAAGAGAGGGAGACCAAGAAAGTATGACTCTGAAGGGAACCTCAGGGTGCCAAACCAACCACCACCGGGATTCTCTCTAACTCCGGGTTCGGGTTCAGAGTTTTCATCAAAACGGGGTCGTTGCAGTAGTGCAAAATCACATGCTTCTGGAAGCTGGAACCTTCTTTCTTCTTTGGGCTTGCTTGGAAGCACAACTGGTACTGATTTTACACCTCATGTTGTGACAGTTAATGCTGGAGAGGACGTTGCTGGAAAGATTTTCTCGATTGCACAGAAGGGTCCTATGGGAATATGCATTCTTTCTGCAAATGGAGCTATATCTAAAGCTACCTTGCGCCAACCTGGTTCTTCTGGTGGCCTATTAACATACGAGGGTCGATTTGAGCTTTTATCCTTGTCTGGATCATTCACAGTCCCGGATAGTAGTGCTGCAATTCCTTCTAGTGGATTGAGTGTCTCACTGGCTGGTCCTGATGGTCGCGTGATAGGAGGGGGTGTTGCTGGTTTATTGACAGCTGCTACCCCAATCCAGATTGTAGTGGGAAGCTTCATGCCAAATGGTCAAAAGCCCCAAAAAAGGAAATATACCCGTCAACCGGTAGCCTCTCATGCTGCTTCAGGACCTATGGCAACAGTATCAGCTGCAGGACCTATCTCACGATCAAATCCTGGTGGTGAAAATCCTCTGGGATCTTTATCTCAGTTGCCAGACCAAGGTCAGAGAGAATCAGTCAGCGCATCGAACGATAAACTGAATTTAGATGATACGCTTAATGGTGATAATTGGAATGATACTGAAGATTTTTCGGATCATAGGCCGTCCCCAGACATCAACATATCTTTGCCTGATGAATAG 1128 0.4832 MEPLKEGVFSGSTGNTNSDTPVTTQFPPQVMNLNFGNLGGGPQPPPLPPQPQPQPPREQPQAPPGTATMSPATTGTGGASGQGSLELFGKKKRGRPRKYDSEGNLRVPNQPPPGFSLTPGSGSEFSSKRGRCSSAKSHASGSWNLLSSLGLLGSTTGTDFTPHVVTVNAGEDVAGKIFSIAQKGPMGICILSANGAISKATLRQPGSSGGLLTYEGRFELLSLSGSFTVPDSSAAIPSSGLSVSLAGPDGRVIGGGVAGLLTAATPIQIVVGSFMPNGQKPQKRKYTRQPVASHAASGPMATVSAAGPISRSNPGGENPLGSLSQLPDQGQRESVSASNDKLNLDDTLNGDNWNDTEDFSDHRPSPDINISLPDE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2103 375 MobiDBLite consensus disorder prediction 63 81 - -
Amo16g2103 375 MobiDBLite consensus disorder prediction 116 137 - -
Amo16g2103 375 Gene3D - 162 294 - -
Amo16g2103 375 ProSiteProfiles PPC domain profile profile. 157 295 IPR005175 -
Amo16g2103 375 MobiDBLite consensus disorder prediction 306 354 - -
Amo16g2103 375 MobiDBLite consensus disorder prediction 88 102 - -
Amo16g2103 375 MobiDBLite consensus disorder prediction 9 32 - -
Amo16g2103 375 MobiDBLite consensus disorder prediction 1 137 - -
Amo16g2103 375 CDD DUF296 161 274 IPR005175 -
Amo16g2103 375 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 52 374 IPR039605 GO:0003680
Amo16g2103 375 MobiDBLite consensus disorder prediction 41 62 - -
Amo16g2103 375 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 274 IPR005175 -
Amo16g2103 375 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 52 374 - -
Amo16g2103 375 MobiDBLite consensus disorder prediction 274 375 - -
Amo16g2103 375 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2103 Amo-Chr16 75314248 75318022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2103 90 349 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 43.214 1.50e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2103 - - gmx:100779227 342.043