Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2056 ATGCCTTCAGGCACCGATATTATTATAACAGACAGAATTATGGATTGGAACTTTGAAATGAAGACACTTGAAGAGGGAGAGGTAATGGAGTGGAATGAAAGCACAAGATCCTTTGCTCCTCGTGCTGAGTCTTCACTAAGCTTCTTTCACAACTATAGCAGCAGTAGCAGCAACCCATCATATCCAGGAAGTGAAGTGAAACAAGCAGCATTGGTGGAGACACCACAAGAGTCGCTTCATGCAATGGCGGAAGTAAAGTACGCGGGCCACCGCGAGAAGAAGAAGCGATTAACAAGCAGCCAGATTGACTTATTGGAGAGAAGCTTTCAGGAGGAGATAAAGTTGGACACTGACAGGAAGATGAAGCTTTCCAGGGAGCTTGGCCTCCAGCCTCGCCAAATTGCGGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAGCTTAAGCACTTGTACTTTGCCCTTAAACAAGAATTTGATCACATCTCCAATGAGAAGCACAAGCTTCAAGAAGAGGTTATGATGTTGAAGGCAAGGCTAAGAGAGCAAGCATTTAGAGCACATGTATCTGGTGTTTACACAGACATGTCTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCCAAGGGAATGATTAGTAATAATAATAATAATAATAATAATATAATAATAATAATAATAATAATAATAATAATAATAATAATCAGCAGATTGTAG 735 0.415 MPSGTDIIITDRIMDWNFEMKTLEEGEVMEWNESTRSFAPRAESSLSFFHNYSSSSSNPSYPGSEVKQAALVETPQESLHAMAEVKYAGHREKKKRLTSSQIDLLERSFQEEIKLDTDRKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLKHLYFALKQEFDHISNEKHKLQEEVMMLKARLREQAFRAHVSGVYTDMSGAETVESTSEMLHGSKGMISNNNNNNNNIIIIIIIIIIIIIISRL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2056 244 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Amo16g2056 244 CDD homeodomain 91 149 IPR001356 GO:0003677
Amo16g2056 244 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Amo16g2056 244 PRINTS Lambda-repressor HTH signature 119 128 IPR000047 GO:0003677
Amo16g2056 244 PRINTS Lambda-repressor HTH signature 128 144 IPR000047 GO:0003677
Amo16g2056 244 Gene3D - 87 153 - -
Amo16g2056 244 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Amo16g2056 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 214 IPR045224 GO:0003700
Amo16g2056 244 SMART HOX_1 90 152 IPR001356 GO:0003677
Amo16g2056 244 Coils Coil 154 181 - -
Amo16g2056 244 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Amo16g2056 244 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 29 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2056 Amo-Chr16 68521646 68523084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2056 29 178 Homeobox Transcription Factor Family AT5G03790 48.466 1.19e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo16g2056 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2056 - - ahf:112757138 352.829