Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2055 ATGGAAGCGAATGGAATAGGTAGTGTAATTTACACTAGCATAAACACTTCATTGCTAGGAATAGAGAATAACACATTACAGCAAAACCCACACAACAATTTGCATCATCATCATCCTCCTCCTCAAATGGTTTATTCTACACACCATGACACTGAATCACACCCTTCACAACAGCAACAACAACAGCAACCACAGCAAGCAATGAAACATGGATACCCTTATTCTTCCAAGAAACCACAGAGCAGCACCTTCAGTGATGAAGATGAACCTGGTGGTGGTTTCGGTGCAGATGAAAGCTCTGGTGACCCGAAGAGGAAGGCCTCGCCATGGCACAGGATGAAGTGGACCGACGCCATGGTTAGGCTTTTGATAATGGCGGTTTACTACATCGGAGACGAAGCTGGTTCAGAAGGTGTAGGAGGAGGAGGAGGCGGCGGTGGTGATCCAAGTGGGAAGAAGAAGAACACCGGATTGCTTCAGAAAAAAGGGAAATGGAAATCAGTGTCGAGGGCTATGATGGAGAAAGGGTTCTACGTTTCTCCTCAGCAATGTGAAGATAAATTCAATGATTTGAACAAGAGGTACAAGAGGGTCAACGATATTCTTGGAAAAGGAACAGCTTGTAGGGTGGTTGAGAATCAGAGCTTTTTGGAAACCATGGATTTGTCGCCAAAGATGAAAGAAGAGGTGAGGAAGCTTCTCAATTCTAAGCACCTTTTCTTTAGGGAAATGTGTGCTTACCATAACAGTTGCGGCCACGGCGGTGGTGCTGCTGCTGTTACTGCCGCCGGCGGTAACGGGCAACACTCGGCTGAGGCGGGAACAGAACAACCTTTACATATTCAACAACCGCAACCGCCACAGCATCAGCAGGGACAGCAGAGATGCTTCCATTCATCGGTGAATGGGGTTGGGATGCTGAAAGAGGACGATGATGACGAGGAGGACGATGAATCTGACGATTTCTCTGACGAGGATGAAGAGGAATCAGGAGAAGGTGGTGGCTCAAGGGGTCAAGTAGAGGATGATGAGAATGATGTAGTGAGGTCAAGGAAGAGACACAGGAACAAGGGAGGGTTCTGTGTGACATCATCATCAACATCAGCGTCTCAATTGATGCAGCAGTTGAACAACGAGGTTGCTGGGGTTCTGCAAGACGGAGGAAAGAATCCATGGGAGAAGAAGCAGTGGATGAAGAAGAGGGTGCTCCAGCTGGAGGAGCAGCAGGTGAGGTACCATGTGGAGGCCTTTGAGCTTGAGAAGCAGAGGCTCAAGTGGGTCCGGTTCAGTTCCAAGAAGGAGAGGGACATGGAGAGGGACAAGCTGGAGAATGAGAGGAGGAGGCTAGAGAATGAGAGGTTGCTCTTGCTTCTTCGCCAAAAGGAGCTTGAATTCACTGCTCTTCATCACCTCAAGCACCAGCAACAGCAGCAACATTCTTCTACCTAG 1449 0.4845 MEANGIGSVIYTSINTSLLGIENNTLQQNPHNNLHHHHPPPQMVYSTHHDTESHPSQQQQQQQPQQAMKHGYPYSSKKPQSSTFSDEDEPGGGFGADESSGDPKRKASPWHRMKWTDAMVRLLIMAVYYIGDEAGSEGVGGGGGGGGDPSGKKKNTGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSFLETMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHGGGAAAVTAAGGNGQHSAEAGTEQPLHIQQPQPPQHQQGQQRCFHSSVNGVGMLKEDDDDEEDDESDDFSDEDEEESGEGGGSRGQVEDDENDVVRSRKRHRNKGGFCVTSSSTSASQLMQQLNNEVAGVLQDGGKNPWEKKQWMKKRVLQLEEQQVRYHVEAFELEKQRLKWVRFSSKKERDMERDKLENERRRLENERLLLLLRQKELEFTALHHLKHQQQQQHSST* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2055 482 MobiDBLite consensus disorder prediction 262 366 - -
Amo16g2055 482 MobiDBLite consensus disorder prediction 332 351 - -
Amo16g2055 482 Gene3D - 115 197 - -
Amo16g2055 482 Coils Coil 432 459 - -
Amo16g2055 482 MobiDBLite consensus disorder prediction 308 331 - -
Amo16g2055 482 MobiDBLite consensus disorder prediction 25 108 - -
Amo16g2055 482 MobiDBLite consensus disorder prediction 268 300 - -
Amo16g2055 482 PANTHER F16F4.11 PROTEIN-RELATED 1 482 - -
Amo16g2055 482 MobiDBLite consensus disorder prediction 139 161 - -
Amo16g2055 482 Pfam Myb/SANT-like DNA-binding domain 112 246 IPR044822 -
Amo16g2055 482 MobiDBLite consensus disorder prediction 46 87 - -
Amo16g2055 482 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2055 Amo-Chr16 68388794 68390392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo16g2055 Myb_DNA-bind_4 3.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2055 - - aprc:113863792 493.426