Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2020 ATGGACACGCTTTTGCGAGGGTGGCCACTAATTTGTGCCACCTCTGCCGGTGTTCCCTGCGTCGGCGCTCCTTCCGTCTCTCCTGTAAACACCTATCCCTCCTTCGGCGGTGACTCACTCTGTCGTCGCGCCGCCGTCTCCATCTCCTTCACTCGTCGCACCTCTGTCAGCCACGTTCAGCGTTCGCAGCACCGTGGGGACTCCTACTGGGAGAAAAAGTCTAAGGCTTCTGGTCTTAGGGCAACTGCAAACCATTTGCGTGATTTGAATCCTGAGGATGCGCATGAAATTCTTAGGCAAGCTGCTGAAATTTTTGAAGGAATAGGAATAATTAATATTGCAGCTCAATGTTTTTCAGATTTGGGGGATCATGAAAAAGCTGGTATAAATTTGAATTACCTCTCCACATTTTTTCCTCTTCTCTTATCGAAGTCCGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGGAACTGGTTGACAAATGGAGCCGACCCATATTTAATAAGAGTACACGGTTTGAGGACATGAGAAATGCTGAGGACGACAGGATTCCTTTCAGGAGGCCAACTGTTAAAAAGCCGACAAATAAAGCAGCAGGGATAGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCATCCCCAATCTAAAATTGATCCAGAAGAAGTTAGACCTTTCCCAGTTGAGCAAGCGAAAATTCTATCACTCTCGCATATACCAGATTCATTGAAACATTTTGATACCTTGCAGAGGCTTGGTAATTTTGATAATGTGACCAATGCTGAGAAGAAATTCATGCATATGTGGAACTCGTTTATTCGAAAGCAACGGGCTGTTTTAGCTTGGCTTTCTATTATTGCGCACCGCAACAAAGACATGAAGGCAGGGGAGAAACTGATCTCTGTGGCTGATGTTGAATGTGAATCTGAAGGTGCCAATAAAATGGTAGCATACCTACGAGAGACTGCATCAAAGAGCAAGACTGGGGGCAACTCTTTAAGATAA 1086 0.4466 MDTLLRGWPLICATSAGVPCVGAPSVSPVNTYPSFGGDSLCRRAAVSISFTRRTSVSHVQRSQHRGDSYWEKKSKASGLRATANHLRDLNPEDAHEILRQAAEIFEGIGIINIAAQCFSDLGDHEKAGINLNYLSTFFPLLLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNAEDDRIPFRRPTVKKPTNKAAGIESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIHPQSKIDPEEVRPFPVEQAKILSLSHIPDSLKHFDTLQRLGNFDNVTNAEKKFMHMWNSFIRKQRAVLAWLSIIAHRNKDMKAGEKLISVADVECESEGANKMVAYLRETASKSKTGGNSLR* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2020 361 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 173 IPR035441 -
Amo16g2020 361 MobiDBLite consensus disorder prediction 214 229 - -
Amo16g2020 361 PANTHER PROTEIN IWS1 HOMOLOG 1 142 252 - -
Amo16g2020 361 PANTHER PROTEIN IWS1 HOMOLOG 1 142 252 IPR044204 GO:0009742|GO:0032784
Amo16g2020 361 MobiDBLite consensus disorder prediction 181 237 - -
Amo16g2020 361 Pfam VEFS-Box of polycomb protein 268 306 IPR019135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2020 Amo-Chr16 64472994 64479654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2020 273 306 C2H2 Transcription Factor Family AT4G16845 52.941 9.09e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2020 K17498 - gmx:100801805 201.445