Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2014 ATGGCGAACCACACTGTTATATTGAAAAAGACTACAATTCTACCATTTTTAACTTGCAAGATTTGTGATGAATTGTTGGAGGATGCTACTGCTATTAAGTGCATCCATCACAAAATTATTGAAGAGGAATTAGAACATTGTCCAGTGTGTGATCTAGATTTGGGACCTAAACCTCTCGAGAAATTGAGGCATGACGAAAGTATGCAATCAATAAGAAACACAATATTTCCTCCAAGAAAAGAAAATGTTGTTAATAAGGCGGATGATGATGTTGCCAATGCTGAGAAGAATGAGTTATTAGGTGACCTTGGCATAATTTTGTTTGAAGATCCTGAGAATGAAAAAGATGTGGCATTAAAAGATTTGCTAGATACTTCAAAAGAACATGTAGAAAATATCAAAGAGAGTTTGCTACCTTCTGAAAAGAGTCATTGCATGGAAAACAAAAATGTTAAGGGTAAAAGTATTTGTCTTGATAATGTGGAAGAATACAATACTGATGAAATTTTACAAATAGAAGATAATAACAATGGCTCTCAAGTGGAAAAATCTAGACAGAAGAAAAAGAAGCACAAGAAAAAAACCAAAAACATCGCTGAAATTTACCAAAAACATGAAACAATTATTATTTCTGGAGAATCAACTGAATATTTACCTTTAGCTTTGGAAGATTTTGATCAAGTTAACATTTTAAGGGATAATTCTTCATTTTGGATATGCTTAGAAGCTTCAGAAAAACAGAAAGGAGATATGCCACATTTGCCTCAAATCAGTGAAAAATATATAAGAATAGAGGATGGAAGCTTACCTGTTTCGTATATCCAAAACTATATAACCAAGAAACTAAATCTAAAAAATGATGATGAGGTTGAAATCACATGTTTGGGAAACCAAATATCCACTAAAATGGAGTTGAAAAAGTTGGCTAAGTTGTGGTTTAACATGTCATTCAAAGGAAAGTCAAAGACAAAGCCATTACCAAATGATTATATTGCAATCATAGGCTATCGTCGTCGTGTCTCACAATCATGA 1032 0.3266 MANHTVILKKTTILPFLTCKICDELLEDATAIKCIHHKIIEEELEHCPVCDLDLGPKPLEKLRHDESMQSIRNTIFPPRKENVVNKADDDVANAEKNELLGDLGIILFEDPENEKDVALKDLLDTSKEHVENIKESLLPSEKSHCMENKNVKGKSICLDNVEEYNTDEILQIEDNNNGSQVEKSRQKKKKHKKKTKNIAEIYQKHETIIISGESTEYLPLALEDFDQVNILRDNSSFWICLEASEKQKGDMPHLPQISEKYIRIEDGSLPVSYIQNYITKKLNLKNDDEVEITCLGNQISTKMELKKLAKLWFNMSFKGKSKTKPLPNDYIAIIGYRRRVSQS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2014 343 SUPERFAMILY RING/U-box 14 55 - -
Amo16g2014 343 MobiDBLite consensus disorder prediction 175 196 - -
Amo16g2014 343 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 86 IPR044807 GO:0004842
Amo16g2014 343 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 144 322 IPR044807 GO:0004842
Amo16g2014 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 100 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2014 Amo-Chr16 63901609 63906895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2014 8 77 C3H Transcription Factor Family AT2G30580 49.367 5.05e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2014 K16277 - ahf:114925965 474.167