Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2005 ATGGAGCAGCAGGTGGAAGAGGAACATGTGGTGCGCAGCAACAATAATAACAACAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACYTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACRGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCTTGGCTCAAGGCGGCGGAGGCCGGGGAACCCGCCATAATAACAAGAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACCACACAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTTACCTTGCAAATATCAAACAGCTCCTTGTACTGCCGCAGCATCACCACCACCAAAACAACGACCGTCATGGAAACCACTGCTCCTATTTCCAAAGCAAGTAAGGTTCACGAATGTTCCATTTGCGGTGCCGAATTCACCTCTGGCCAAGCCTTGGGTGGTCATATGAGGAGGCACAGGGGTTTGTTGACCGTTTCTTCCGCCACAGCWGCAACCACAACCACCACCACTACAACTACATCATCATCTATTAGTGGTGCSAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGATCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTACCAAAGTTCTCTTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG 912 0.4605 MEQQVEEEHVVRSNNNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRGTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTQENYNNDPTSTALTLQISNSSLYCRSITTTKTTTVMETTAPISKASKVHECSICGAEFTSGQALGGHMRRHRGLLTVSSATAATTTTTTTTTSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVPKFSFQSKEKVIVFSSAASLVDCHY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2005 303 Coils Coil 239 259 - -
Amo16g2005 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 8 303 - -
Amo16g2005 303 SMART c2h2final6 192 214 IPR013087 -
Amo16g2005 303 SMART c2h2final6 106 128 IPR013087 -
Amo16g2005 303 MobiDBLite consensus disorder prediction 229 254 - -
Amo16g2005 303 MobiDBLite consensus disorder prediction 45 72 - -
Amo16g2005 303 PANTHER ZINC FINGER PROTEIN ZAT5 8 303 - -
Amo16g2005 303 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Amo16g2005 303 SUPERFAMILY beta-beta-alpha zinc fingers 105 214 IPR036236 -
Amo16g2005 303 MobiDBLite consensus disorder prediction 45 63 - -
Amo16g2005 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Amo16g2005 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Amo16g2005 303 Pfam C2H2-type zinc finger 191 215 - -
Amo16g2005 303 Pfam C2H2-type zinc finger 106 131 - -
Amo16g2005 303 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Amo16g2005 303 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g2005 303 Gene3D Classic Zinc Finger 104 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2005 Amo-Chr16 60653803 60655060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2005 16 303 C2H2 Transcription Factor Family AT5G03510 38.679 7.82e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g2005 zf-C2H2_6 2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2005 - - adu:107494043 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2005 16 60653803 60655060 Amo16g2005 16 60653803 60655060 ECH
Amo16g2005 16 60653803 60655060 Amo18g0530 18 7112729 7114185 ECH
Amo16g2005 16 60653803 60655060 Amo06g1417 06 39094621 39095970 hybridization