Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1957 ATGCCCCATAGAAGCTGCATTTTGCTACTGTGTATTGTTGGTTCCATGTTAGCACTTGAAGGAGCTGCAATGCTGAACCTAACTCTACCAGGACAACACCCTGACCCTGAAGCTGTTGCTAATGAAGTCCACAGGAAGGTGAATGGTTCAATGGCAAGAAGGGAAATGCTGTCGACAGTGTCTTCTTGCCTAACTGGTAACCCCATAGACGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCAGACTGCGCCATTGGGTTTGGGCAACACGCTAAGGGCGGAAAGGATGGGGCGTTCTACATTGTCACAGATTCCTCAGATGATGATGCAGTAAACCCTAAGCCAGGAACACTCAGATATGCTGTCATACAGAATGAGCCGCTGTGGATCGTGTTCCCAAGTAACATGAAGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCATCCTTCAGGGAACACAAATGTGCGTTCAAGCCCTGACCACTATGGCTACCGGACGCTGTCTGACGGGGATGGAATCTCCATCTTTGGGTCCAAAGACATATGGATAGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTCATCGACGCAGTCATGGGCTCCACTGGAATCACAATCTCCAATAACTACTTCTCCCACCACAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCAGGCATGCAGGTGACCATTGCCTTCAACCATTTTGGTCCCATGCTCGTCCAGCGCATGCCACGTTGCCGCCGGGGTTACATCCATGTGGTTAACAACGACTTCACACGGTGGCAGATGTATGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCACCCCTGAACCCCTTTGCAAAGGAGGTGACCAAGAGGGTTGACACTGCGGAGGGGAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTGAATGGCGCGTTTTTTGTGGCCTCTGGGGAAGGCGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCAAAGTCTGCTGATAGGATTTCTCAGCTTACCATGTCCGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCTAACAGCCAGGGCCAGGGCGACGGAGTCACATGGTTGGTGCCAGAATACACAGAGGACTATTCGCAGGGCTCAAGGGTGGTGCTGCCATCTTCCCTTACTTTCACCCTTGTGTGGTCTTTCCTGCTCTTGTTCATACTGTCAACAGTTATTCTATAA 1422 0.5105 MPHRSCILLLCIVGSMLALEGAAMLNLTLPGQHPDPEAVANEVHRKVNGSMARREMLSTVSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGAFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMKIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPDHYGYRTLSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWQMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMSAGVLGVAKDNSVGMWSKGPNSQGQGDGVTWLVPEYTEDYSQGSRVVLPSSLTFTLVWSFLLLFILSTVIL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1957 473 Gene3D - 66 408 IPR012334 -
Amo16g1957 473 Pfam Pectate lyase 150 326 IPR002022 -
Amo16g1957 473 SUPERFAMILY Pectin lyase-like 59 396 IPR011050 -
Amo16g1957 473 PANTHER PECTATE LYASE 12-RELATED 2 425 - -
Amo16g1957 473 PANTHER PECTATE LYASE 18-RELATED 2 425 IPR045032 GO:0030570
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Amo16g1957 473 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Amo16g1957 473 SMART amb_all 141 338 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1957 Amo-Chr16 55631431 55633206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1957 1 473 Polysaccharide Lyase AT3G53190 71.340 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1957 K01728 - gmx:100775595 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1957 16 55631431 55633206 Amo16g1957 16 55631431 55633206 ECH