Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1950 ATGGCAAAGCGGTGCCGCAAACTATCAGATCTGAGATCGCGGAGGAAGTGTGCTCCCTCTCTCAAAAGTCGGCAAGAGAAAAGTTCAGGTTTGAGAAAGACGAAGTCTCAGATTTTTACAAACAGCTCTGCTTGTAAATTGAAATTAGGCGATCTCAAAGGAGCATCGTTGGATACCGAATTTGCAGTGCGTGATGGAGAGAATAATGCCAAAGCTTTGTTCTGCCAAGGTCAGGCATATATGGCACTCCATGACATTGATGCTGCCGTTGAAAGCTTTAACAAGGCATTGGCCTTGGAGCCAAACGATGGTAATTTACGATTTTGGATCATGCCTTTGGCATAA 345 0.4464 MAKRCRKLSDLRSRRKCAPSLKSRQEKSSGLRKTKSQIFTNSSACKLKLGDLKGASLDTEFAVRDGENNAKALFCQGQAYMALHDIDAAVESFNKALALEPNDGNLRFWIMPLA* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1950 114 MobiDBLite consensus disorder prediction 1 35 - -
Amo16g1950 114 SUPERFAMILY TPR-like 30 110 IPR011990 GO:0005515
Amo16g1950 114 Pfam Tetratricopeptide repeat 70 103 IPR013105 -
Amo16g1950 114 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Amo16g1950 114 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 107 - -
Amo16g1950 114 Gene3D Tetratricopeptide repeat domain 4 108 IPR011990 GO:0005515
Amo16g1950 114 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g1950 114 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 24 107 - -
Amo16g1950 114 SMART tpr_5 70 103 IPR019734 GO:0005515
Amo16g1950 114 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1950 Amo-Chr16 54307973 54308768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1950 25 108 Calmodulin-binding Proteins AT3G25230 34.524 4.15e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1950 K05864 - ming:122083301 140.198