Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1938 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGACCAATTGTTATCACCGTGGAATCGCAGTCGCATAGCAGCTTCGGAGACGACGACGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCAAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTCGCTTGAAGCCAAATGTGCTGCGCTGGAAAGTAAGGGTGCTGATTGGTGTGCGAAAGAGGCTCTATGGAGGAAAAGAGAAGCTGCATACCGTCTGGAAATTCAGAAGCTTAAAGCGCTGCTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAGCATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGGTTCCTCCTTGGTCGTGTTCTTGGGATCTCAACAGTTCACATTACATGTATGCTGGACTTCAGAATGGTTGTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCGTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAAACTGATAACCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGTCCGAAATTTGACATGTCAATGGACATAGAGGGTCAAAGAAGTTTGTTTGCAGCTGTAGATGAAGCAACGTTTGAATTGATCTTGCATGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1560 0.4417 MDNPFDHHVPPPHATVTAADYGPIVITVESQSHSSFGDDDVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASQVVTVDDESQKKIRSLEAKCAALESKGADWCAKEALWRKREAAYRLEIQKLKALLLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKAFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLSVQSKNTVVNYDLQVPPWSCSWDLNSSHYMYAGLQNGCVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAVGLCQWNIDSEEGPFMLPETDNQGVCISLAYCPSSDDIVVSYRPKFDMSMDIEGQRSLFAAVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1938 519 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 453 514 - -
Amo16g1938 519 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 38 454 - -
Amo16g1938 519 SMART ring_2 78 123 IPR001841 -
Amo16g1938 519 Pfam Ring finger domain 78 124 IPR001841 -
Amo16g1938 519 SUPERFAMILY RING/U-box 69 130 - -
Amo16g1938 519 MobiDBLite consensus disorder prediction 31 64 - -
Amo16g1938 519 Gene3D - 213 453 IPR015943 GO:0005515
Amo16g1938 519 Coils Coil 144 164 - -
Amo16g1938 519 CDD mRING-C3HGC3_RFWD3 74 124 - -
Amo16g1938 519 ProSiteProfiles Zinc finger RING-type profile. 78 124 IPR001841 -
Amo16g1938 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 185 IPR013083 -
Amo16g1938 519 PANTHER RFWD3 PROTEIN 453 514 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Amo16g1938 519 PANTHER RFWD3 PROTEIN 38 454 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Amo16g1938 519 MobiDBLite consensus disorder prediction 38 52 - -
Amo16g1938 519 SUPERFAMILY WD40 repeat-like 234 443 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1938 Amo-Chr16 53098661 53103134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1938 19 136 C3H Transcription Factor Family AT5G48655 27.132 1.59e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1938 K15691 - gmx:100818898 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1938 16 53098661 53103134 Amo06g1358 06 33947068 33951989 hybridization