Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1931 ATGAGCATAGCCTGTGGGATGGCAAAATCAGCAAAGACAGAGGGGCTCAAAGACTTACCGGTGGTTAGAGACAGAGAAAAAGGGCTTCGAATAAGCAAACCCACTTGCCACTTTTCACTCTCACCATCTTTCATTCTCAAGCCATTAAGTAAATGGCAATGGAGAGAGTCCGAGAGAGGCATACATAAAAGGAACTGTGATGGGAATTCGTGCATAAAAGAAAGAGAAAGGAGTGTGAGAATTTTAATAATTAAAGAAATGTCACAAGATTCTTGTTTGGAGGCAGCAAATACAACACTCGAGCAGTGGAAATGGACCGAAATGCAAGGCCTTGAGCTTCTTCCTGATGCTCCCATTTCCCACCATTATAATAATAAACCCAACAACACAAAACTCCTCACACACCAAATGGAAACTACTACTACTACTATTGAACCAAACAAAGATGATGATGCTCCTTCGTCTGCTACTTCTTCTTCTGGTAACGGTAGTAGTGACAGCAACAAGAACAACAAGAAGAATGAGAGTGTTCCCTCTGTTGGGTTCAGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATGTTCTAATGTCCATTGGAAGCGTTGGAGCAATCGTGCACGGTTGTTCCTTGCCACTCTTCCTTCGCTTCTTCGCTGATCTTGTCAACTCTTTTGGTTCCAATGCCAACAACTTGGACAAGATGACTCAGGAAGTCGTCAAGTATGCATTTTACTTTCTGGTAGTTGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATATCTTGTTGGATGTGGAGTGGGGAGAGGCAATCAACAAGGATGAGGATCAAGTACCTTGAAGCTGCTCTCAGCCAAGACATTCAGTTTTTCGACACGGATGTTCGAACCTCCGATGTTGTAATTGCCATCAACACTGATGCCGTCATGGTCCAAGATGCCATCAGCGAGAAGTTGGGAAACTTCATTCACTACATGGCCACATTTGTGTCTGGTTTTGTTGTTGGTTTCACTGCAGTCTGGCAATTGGCACTTGTGACCCTTGCCGTGGTCCCTATGATCGCAGTCATTGGCGCCATTCACACCACCACATTGGCCAAGCTCTCTGGCAAAACCCAGCAAGCTCTTTCTGAAGCTGGCAACATTGTGGAACAGACAGTTGTGCAAATTCGAGTGGTACTGGCCTTCGTCGGGGAGTCTCGAGCATTGCAGGCATACTCTTCGGCATTGAAGGTTGCCCAGAAGCTTGGCTACAAAACTGGTTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGTTGTTATGCACTTCTTCTTTGGTATGGAGGCTATCTGGTTCGCCACCACGCCACCAATGGAGGGCTTGCCATTGCCACCATGTTTGCTGTTATGATTGGTGGAATAGGTCTAGGCCAGTCTGCGCCGAGCATGGCAGCATTTACAAAGGCCAGAGTTGCTGCTGCAAAGATTTTTCGCATAATCGATCACAAACCGCGGATAGATAAGAACAGTGAATCTGGTTTGGAGCTTGAGACAGTAACTGGACTTTTAGAGCTAAAGAATGTGAACTTTTCATATCCGTCAAGGCCAGATGTTCCGATCCTCAACGACTTCTCGTTGAGTGTGCCTGCTGGCAAGACAATAGCCTTGGTAGGTAGCAGTGGCTCTGGAAAGAGCACTGTGGTTTCCCTCATTGAAAGATTTTATGACCCAACTTCAGGACAAGTTTTTCTGGATGGCCATGACATTAAAACATTGAAGCTTAGATGGTTGAGGCAGCAGATAGGGCTAGTGAGCCAAGAGCCTGCGTTGTTCGCAACCACGATTAGAGAAAATATACTATTGGGAAGGCCTGATGCCAACCAGGTTGAGATCGAAGAAGCAGCCAGGGTAGCTAATGCTCATTCCTTCATCATCAAACTTTCTGAAGGTTACGAAACCCAGGTTGGAGAGAGAGGGATGCAACTCTCAGGAGGACAAAAACAGAGAATAGCAATTGCAAGGGCTATGCTTAAAAACCCAGCAATTCTCCTCCTGGATGAGGCAACAAGTGCATTGGATTCTGAATCAGAGAAACTGGTGCAAGAAGCCCTGGACCGGTTCATGATTGGTAGAACAACTCTTGTAATCGCGCATCGCCTCTCGACTATACGCAAAGCCGACCTTGTAGCTGTACTTCAGCAAGGAAATGTGTCTGAAATTGGAACTCATGATGAGCTCTTTTCCAAAGGAGAAAATGGAGTCTATGCAAAGCTCATAAAGATGCAAGAAATGGCTCATGAAACTGCCATGAACAATGCCAGAAAGAGTAGTGCACGGCCTTCAAGTGCAAGAAACTCGGTAAGCTCACCCATAATTGCTCGGAATTCTTCTTACGGCCGGTCACCATACTCTCGCAGGCTGTCTGATTTCTCCACCTCAGATTTCAGTCTGTCGCTCGATGCATCACATCCGAATTACAGGCTCGAAAAGCTTGCCTTCAAAGAGCAAGCAAGTTCCTTCTGGCGACTAGCGAAGATGAACTCTCCTGAGTGGCTATACGCTTTGATTGGCTCTATAGGCTCCATTGTTTGTGGATCACTTAGTGCTTTTTTCGCTTATGTTCTCAGTGCTGTCCTCAGTGTGTATTACCATCCGAATCACAAGCACATGATCACACAAATTGATAAGTACTGCTACTTGTTGATTGGCCTTTCATCAGCTGCACTTATCTTCAACACATTGCAACATTCCTTCTGGGATATTGTTGGTGAAAATCTAACAAAACGAGTGAGGGAGAAAATGCTGACGGCAGTGCTAAAAAATGAGATGGCTTGGTTTGATCAGGAGGAAAACGAGAGTGCACGGATCGCTGCTAGGCTTGCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCGGTGATAGTTCAGAACACTGCGCTCATGCTAGTTGCGTGTACTGCAGGGTTCGTCCTGCAGTGGCGTCTTGCCCTTGTCCTCATCGCCGTCTTTCCTCTTGTTGTTGCGGCCACTGTGTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGATCTGGAAGCTTCTCATGGCAAGGCCACACAGTTAGCAGGAGAAGCTATAGCCAATGTAAGAACCGTTGCAGCCTTCAATTCAGAAACCAAAATTGTTGGGCTTTTCGCTTCGAATCTCGAAATTCCACTACAACGGTGCTTTTGGAAGGGACAAATTTCTGGAAGCGGATATGGGATAGCACAGTTTGCTCTTTATGCTTCCTATGCACTTGGTCTCTGGTATGCTTCTTGGCTTGTGAAGCACGGAATCTCTGATTTCTCCAAAACCATTCGAGTGTTCATGGTCCTCATGGTCTCTGCTAATGGAGCTGCCGAAACTTTGACATTGGCTCCTGATTTCATCAAGGGAGGCCGAGCTATGAGGTCAGTCTTTGATCTCCTTGACCGGAGAACCGAAATTGAGCCGGATGATCCAGATGCCACCCCTGTTCCTGATCGTCTTCGAGGCGAAGTTGAACTTAAGCATGTGGACTTCTCTTACCCAACGCGGCCCGATATGGCTGTTTTTCGCGACCTCAGCCTTCGTGCGAGGGCGGGTAAAACTCTGGCCCTTGTGGGACCTAGTGGCTGCGGCAAGAGCTCAGTCCTTGCACTTATACAGAGATTCTATGATCCATGTTCTGGTAGAGTCATGATTGATGGAAAGGACATAAGGAGATACAATCTCAAGTCTCTAAGAAGACACATTGCTGTGGTACCTCAGGAGCCATGCTTGTTTGCGACAAGTATTTATGAAAACATTGCCTATGGACATGACGCGGCCTCTGAAGCGGAGATAGTGGAGGCTGCGACTCTTGCCAATGCTCACAAGTTCATATCTTCTCTTCCAGATGGATACAAAACATTTGTTGGGGAGAGAGGAGTTCAACTTTCTGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTTGTGAGGAAGGCTGAGCTTATGCTTCTTGACGAAGCAACTAGTGCGCTCGACGCTGAATCCGAGAGGTCGGTTCAGGAGGCTCTAGACCGTGCCTGCTCGGGGAAAACAACCATCGTTGTTGCACACAGGCTATCAACCATCAGAAATGCCAACCTGATTGCTGTGATTGATGATGGCAAAGTAGCTGAACAAGGCTCGCATTCGCACTTGTTGAAGAATCATCCTGATGGGGTTTATGCGCGCATGATTCAATTACAAAGATTCACACATACCCAAGTCATTGAGATGGCGTCCGGTTCAAGTTCTTCAACAAGGCCAAAAGATGTCGAAAGACAAGGTAACGGTGGCTGTAAATACAACACTTGGGACTCTAGCACTTTAGCTTGTTGA 4377 0.4645 MSIACGMAKSAKTEGLKDLPVVRDREKGLRISKPTCHFSLSPSFILKPLSKWQWRESERGIHKRNCDGNSCIKERERSVRILIIKEMSQDSCLEAANTTLEQWKWTEMQGLELLPDAPISHHYNNKPNNTKLLTHQMETTTTTIEPNKDDDAPSSATSSSGNGSSDSNKNNKKNESVPSVGFSELFRFADGLDYVLMSIGSVGAIVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTRMRIKYLEAALSQDIQFFDTDVRTSDVVIAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKTQQALSEAGNIVEQTVVQIRVVLAFVGESRALQAYSSALKVAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHKPRIDKNSESGLELETVTGLLELKNVNFSYPSRPDVPILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVFLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLSEGYETQVGERGMQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGNVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYHPNHKHMITQIDKYCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMTGFSGDLEASHGKATQLAGEAIANVRTVAAFNSETKIVGLFASNLEIPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMAVFRDLSLRARAGKTLALVGPSGCGKSSVLALIQRFYDPCSGRVMIDGKDIRRYNLKSLRRHIAVVPQEPCLFATSIYENIAYGHDAASEAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNANLIAVIDDGKVAEQGSHSHLLKNHPDGVYARMIQLQRFTHTQVIEMASGSSSSTRPKDVERQGNGGCKYNTWDSSTLAC* 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1931 1458 SUPERFAMILY ABC transporter transmembrane region 840 1163 IPR036640 GO:0005524|GO:0016021
Amo16g1931 1458 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 197 1419 IPR039421 -
Amo16g1931 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 853 1140 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1931 1458 SUPERFAMILY ABC transporter transmembrane region 184 505 IPR036640 GO:0005524|GO:0016021
Amo16g1931 1458 CDD ABC_6TM_Pgp_ABCB1_D2_like 842 1158 - -
Amo16g1931 1458 CDD ABC_6TM_Pgp_ABCB1_D1_like 197 494 - -
Amo16g1931 1458 Pfam ABC transporter 539 688 IPR003439 GO:0005524
Amo16g1931 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1167 1415 IPR027417 -
Amo16g1931 1458 ProSitePatterns ABC transporters family signature. 1315 1329 IPR017871 GO:0005524
Amo16g1931 1458 MobiDBLite consensus disorder prediction 1425 1445 - -
Amo16g1931 1458 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 197 1419 - -
Amo16g1931 1458 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 199 486 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1931 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 521 757 IPR003439 GO:0005524
Amo16g1931 1458 Gene3D ABC transporter type 1, transmembrane domain 1142 1424 IPR036640 GO:0005524|GO:0016021
Amo16g1931 1458 CDD ABC_MTABC3_MDL1_MDL2 522 760 - -
Amo16g1931 1458 SMART AAA_5 1203 1395 IPR003593 -
Amo16g1931 1458 SMART AAA_5 548 734 IPR003593 -
Amo16g1931 1458 Gene3D ABC transporter type 1, transmembrane domain 832 1141 IPR036640 GO:0005524|GO:0016021
Amo16g1931 1458 Gene3D - 511 761 IPR027417 -
Amo16g1931 1458 Gene3D - 1165 1416 IPR027417 -
Amo16g1931 1458 MobiDBLite consensus disorder prediction 143 176 - -
Amo16g1931 1458 ProSitePatterns ABC transporters family signature. 660 674 IPR017871 GO:0005524
Amo16g1931 1458 Gene3D ABC transporter type 1, transmembrane domain 184 773 IPR036640 GO:0005524|GO:0016021
Amo16g1931 1458 CDD ABC_MTABC3_MDL1_MDL2 1176 1415 - -
Amo16g1931 1458 Pfam ABC transporter transmembrane region 199 470 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1931 1458 Pfam ABC transporter transmembrane region 854 1123 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo16g1931 1458 Pfam ABC transporter 1195 1343 IPR003439 GO:0005524
Amo16g1931 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 760 IPR027417 -
Amo16g1931 1458 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1176 1412 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1931 Amo-Chr16 52291114 52298431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1931 173 1437 Calmodulin-binding Proteins AT2G36910 88.389 0.0 2302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1931 K05658 - gmx:100814667 2308.87