LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g1907	ATGATTCAATCTCAGACTCAATCTCATTCCAGTAAGATAGGAACCCTAAAATTGATTGCGATGGGGCGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACGAGTCGGCAAGTAACATTTTCGAAGAGAAGGAATGGATTTCTAAAGAAAGCTAAAGAATTATCTATTCTCTCTGATGCTAAAGTTGGATTGATTGTAAAAAAAATACTTTTTTGTGAAACCATTGCAGAAAAGAGTAAGGAACTTGAAACTTGCCAGGGTGAAGTCAAGGCCTTAAGGGCAACTGAAGCTCTGAAGGATAAGGCCATAGAAGAGCTGAGAAATGAAGTTAGTAAACTGGATCAGAAACTTAGAACAATCGAGAATCATCTTAAGGACAAGAATCTAGAAATAAAGAAATTGACAGAAGAAAAGAAAGATGCCTTGGCTGCGCAATATGCAGCAGAAGCAGCTCTTAGAAGGAGTGTGATCACTCCTCTTGAGGATGAGATCAAGTTGTATAAAAATGAGATTAAAGCACTGCAAGAAGATAAGAAGGCATTATCAATATATATAGATATACCTAACAACACTTCTGATTCTGAGGCTCTACCAGGAAGTGGTGGTTCTAATGCTAACAATCAATGGCGTAGTTTCTTCAAGCTTCTCAAGAAAGGCTCACAAATGCCATTTCAACCATTTCACTTTCTTAAAAAGAATGTTCCTAAGTTAACTAGAAGGAAGAGTAAGAAGGCTGCAACTGATGACTTCAGCCATGATAATGTAATTGGGGAGGGAAGGTATGCAGAGGTATACTTAGGAAAATTGGAATATGGAACCTTTGTTGCCATAAAGAAGCTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATCATATGTTGCATTTTATCTTTGCTTATAAGGTCTTATCATTTGATGTCTTCCAATGCATTGAGCAAGTTAGAGCATATTGTTCTTGTACATTATCGTGATATTAAAGAGTGTTACAAGTCTGGCATCTCACATTCCCCTGCAGCTCCAGTATCCTTGGTTGGTAGCTCTCAAACAAGTTCAGTGCCTTCCTCTGTCAAAATAGAGTCACCTATAACTGAAATTCAAACATCTATTTCATCAACTGAAAATGAAGTTGAGCAGGCTGGACGATCTTCAGTGTGTGATCTTTGA	1188	0.3805	MIQSQTQSHSSKIGTLKLIAMGRGKIAIRRIDNSTSRQVTFSKRRNGFLKKAKELSILSDAKVGLIVKKILFCETIAEKSKELETCQGEVKALRATEALKDKAIEELRNEVSKLDQKLRTIENHLKDKNLEIKKLTEEKKDALAAQYAAEAALRRSVITPLEDEIKLYKNEIKALQEDKKALSIYIDIPNNTSDSEALPGSGGSNANNQWRSFFKLLKKGSQMPFQPFHFLKKNVPKLTRRKSKKAATDDFSHDNVIGEGRYAEVYLGKLEYGTFVAIKKLTRGNQEEMTADFLSELGIICCILSLLIRSYHLMSSNALSKLEHIVLVHYRDIKECYKSGISHSPAAPVSLVGSSQTSSVPSSVKIESPITEIQTSISSTENEVEQAGRSSVCDL*	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g1907	395	Pfam	Microtubule-associated protein 70	75	183	IPR009768	GO:0007010\|GO:0008017
	Amo16g1907	395	SMART	madsneu2	21	75	IPR002100	GO:0003677\|GO:0046983
	Amo16g1907	395	Coils	Coil	76	145	-	-
	Amo16g1907	395	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	30	67	IPR002100	GO:0003677\|GO:0046983
	Amo16g1907	395	ProSitePatterns	Protein kinases ATP-binding region signature.	257	280	IPR017441	GO:0005524
	Amo16g1907	395	PANTHER	MICROTUBULE-ASSOCIATED PROTEIN 70-2	52	183	IPR009768	GO:0007010\|GO:0008017
	Amo16g1907	395	SUPERFAMILY	Protein kinase-like (PK-like)	230	303	IPR011009	-
	Amo16g1907	395	Coils	Coil	158	185	-	-
	Amo16g1907	395	PANTHER	MYOSIN II HEAVY CHAIN FAMILY PROTEIN	52	183	-	-
	Amo16g1907	395	ProSiteProfiles	MADS-box domain profile.	21	67	IPR002100	GO:0003677\|GO:0046983
	Amo16g1907	395	SUPERFAMILY	SRF-like	21	67	IPR036879	GO:0003677\|GO:0046983
	Amo16g1907	395	Gene3D	-	33	95	IPR036879	GO:0003677\|GO:0046983
	Amo16g1907	395	MobiDBLite	consensus disorder prediction	376	395	-	-
	Amo16g1907	395	PRINTS	MADS domain signature	23	43	IPR002100	GO:0003677\|GO:0046983
	Amo16g1907	395	PRINTS	MADS domain signature	43	58	IPR002100	GO:0003677\|GO:0046983
	Amo16g1907	395	Gene3D	Phosphorylase Kinase; domain 1	229	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g1907	Amo-Chr16	51545808	51548691	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g1907	21	67	MADS-box Gene Family	AT2G14210	85.106	2.41e-19	84.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Amo16g1907		MAP70	7.8e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g1907	-		-	aip:107607219	204.142