Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1895 ATGGATCAGTCTCCGCTCGTTCCAGCTGAGGTGCCGGATTTCATTGGCGGCGGCGGCAGCAGCAGCAACACGAGGAACGTTTCCATGGTGAACGGTTACATTGTTTACACCAGAGCTAATAGGGGAAACCGGAATTTATGTAACGAAATTTCCAATACCAATGAATCTACGAAGTTCAGGATTCGCGAAGACGTAGAACCGAATGCCAAGCTTCCAATGAAAGAAAATAACGGAAAAAAAATTTTGGCGGGAAAGGAGAACGAGTGTTCCGAACCGAAACTCAAGCTCAGCGTTTCAATGGTTAGGCCATTTAAGCGGTTTACACGACGGTCGGCGGCACTGGAAGGGAAAGTCGTTTCGAATGATGATGGTGGAGAGGTGAGCGGGATATCGAGGAACAAGTTGGAAATGAAGATGTCGAAGAAGATTGTGGTCAACAAGACGCCCATGACGGTGAAGGAGCTCTTCCACACTGGTCTTCTTGATGGGGTCTCGGTGGTTTACATGGGCGGTATTAAGAAGGCTTCAGGATTACGGGGTGTTATCAGAAATCTAGGAATATTGTGCTCATGCTCTCTGTGCAATGAACGCAGGATTATTCCGCCTTCCAAATTCGAGGTCCATGCTTGTGGACAATACAGGAGAGCAGCAGAGTATATCTGCCTTGAAAATGGGAAGAGCTTGCTTGATCTATTGAGAACGTGCAGGGGAGTTCCTCTGTATGATTTGGAGGCGACAGTTCAAAACTTTCTTGGTTCTCCGCATGAAGAAAAACATTTTACTTGTAAAAGATGCAAAGGGTGTTTCCCTTTCTCATGTGCGGGAAGAGTGGGGCCCATATGCTGTTATTGTGTTGAATCGAGGAAATCTGAAGACAGTTCTGATAACGCTGTTAGCAAGAGAGTCAGGTCCCCCAGACCAATGTCTGTCTCCAATCCATCCAATGCTCCTGAGCTGTCTATTGCTTCAGAAAATAAAAGAAAAAGGAAGAAAAGAACAAAGTCATCAAAATGGGCTAACAAGTCGAAGTCTTCCAAGAGTGCTTCTATTCCTATTCTACCAAAGATGACGACTTCATGGAAAATGAGAAAGAAGAAGCTGTCAGGAAACTCAAAGATTCTGGAAGTTACTTCAAATGCAAAGTATTTATCCCCACAAAATAAGAGCAAATGGAAAATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAAGAGAATGGATTACCTGATGGAACTGAAGTTGGTTATTATGCCCGTGGGAAGAGATTGCTTGAAGGCTTTAAAATGGGCTCTGGAATTGTTTGCAGATGCTGCGACTCTGAGGTCAGCCCTTCACAGTTTGAGGCCCATGCAGGTTGCGCTTCTCGCAAGAAACCTTATGCTTACATTTATACATCAAATGGTGTATCTCTCCATGAGTTAGCAATATCTCTCTCCAAAGATCGAAAATATTTGGCAACAGACGATGATCTATGCATTGTTTGTTGGGATGGTGGAAATTTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGCGGTGACTGGTACTGTGAATTTTGCCAAAACATGTTTCAGAGAGAGAAGTTTGTGGCGTACAATTCCAATGCTGTTGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATCCAAGAGATAACAAACAGATGCATACGCATAGTCAAAGATGTTGAAGCTGACCTTGGTGCATGTGCTTTATGCAGAGGTGTTGACTTCAGCAGATCCGGCTTTGGCCCACGCACCATAATACTATGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGAACATAAGATGGCATATTTGAAGGAATTGCCAGTGGGGAAGTGGCTTTGTTGTAATGATTGTACAAGAATACATTCTACTTTGGAGAACCTTCTGGCCATGGGTGCTGAGAGACTCCCTGAATCTCTACTGGGCATTATAAAGAAAAAGCAAGAGGAGAAAGGACTGGAACCCCTCAATGATATTGACATAAGATGGAAGCTTCTTAATGGCAAAATTGCTTCTCGTGAAACCAGGCCATTGCTTTTGGAGGCTGTTTCAATCTTCCACGAATGTTTCAGTCCCATAGTTGATGCAATTAGTGGACGGGACTTTATTCCAGCCATGGTTTATGGAAGGAATGTTCGGGGGCAGGAGTTTGGAGGAATGTATTGTGCAGTATTAACGGTCAATTCATATGTGGTATCTGTGGGCATGCTTCGAATTTTTGGCAAAGATATTGCCGAACTCCCCTTGGTTGCAACCACTAACAAGGACCACGGAAAGGGTTACTTCCAAACACTCTTCTCTTGCATTGAGAGGCTGCTTTCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCAGAATCGATATGGACAGATAAATTTGGATTTAGCAAGATGATACCAGACCAGCTTATCAGCTACAGAAAGAATTGCCATCAGATGGTGACATTCAAAGGTACAAATATGCTTCATAAAACGGTGCCTCCCTGCCGGATCATCCACAATCAATCATGGCAATCTGATATTTAA 2595 0.4362 MDQSPLVPAEVPDFIGGGGSSSNTRNVSMVNGYIVYTRANRGNRNLCNEISNTNESTKFRIREDVEPNAKLPMKENNGKKILAGKENECSEPKLKLSVSMVRPFKRFTRRSAALEGKVVSNDDGGEVSGISRNKLEMKMSKKIVVNKTPMTVKELFHTGLLDGVSVVYMGGIKKASGLRGVIRNLGILCSCSLCNERRIIPPSKFEVHACGQYRRAAEYICLENGKSLLDLLRTCRGVPLYDLEATVQNFLGSPHEEKHFTCKRCKGCFPFSCAGRVGPICCYCVESRKSEDSSDNAVSKRVRSPRPMSVSNPSNAPELSIASENKRKRKKRTKSSKWANKSKSSKSASIPILPKMTTSWKMRKKKLSGNSKILEVTSNAKYLSPQNKSKWKITKKDQRLHKLVFEENGLPDGTEVGYYARGKRLLEGFKMGSGIVCRCCDSEVSPSQFEAHAGCASRKKPYAYIYTSNGVSLHELAISLSKDRKYLATDDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCEFCQNMFQREKFVAYNSNAVAAGRVEGVDPIQEITNRCIRIVKDVEADLGACALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLREHKMAYLKELPVGKWLCCNDCTRIHSTLENLLAMGAERLPESLLGIIKKKQEEKGLEPLNDIDIRWKLLNGKIASRETRPLLLEAVSIFHECFSPIVDAISGRDFIPAMVYGRNVRGQEFGGMYCAVLTVNSYVVSVGMLRIFGKDIAELPLVATTNKDHGKGYFQTLFSCIERLLSFLNVKNLVLPAAEEAESIWTDKFGFSKMIPDQLISYRKNCHQMVTFKGTNMLHKTVPPCRIIHNQSWQSDI* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1895 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 570 IPR013083 -
Amo16g1895 864 CDD PHD1_AIRE 493 533 - -
Amo16g1895 864 Pfam Tify domain binding domain 432 478 IPR032308 -
Amo16g1895 864 Pfam Tify domain binding domain 180 235 IPR032308 -
Amo16g1895 864 MobiDBLite consensus disorder prediction 305 321 - -
Amo16g1895 864 SUPERFAMILY FYVE/PHD zinc finger 572 635 IPR011011 -
Amo16g1895 864 SMART PHD_3 581 638 IPR001965 -
Amo16g1895 864 SMART PHD_3 493 534 IPR001965 -
Amo16g1895 864 MobiDBLite consensus disorder prediction 294 354 - -
Amo16g1895 864 PANTHER AUTOIMMUNE REGULATOR 25 855 - -
Amo16g1895 864 MobiDBLite consensus disorder prediction 340 354 - -
Amo16g1895 864 ProSitePatterns Zinc finger PHD-type signature. 494 533 IPR019786 -
Amo16g1895 864 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g1895 864 ProSiteProfiles Zinc finger PHD-type profile. 491 536 IPR019787 -
Amo16g1895 864 SUPERFAMILY FYVE/PHD zinc finger 478 535 IPR011011 -
Amo16g1895 864 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 25 855 - -
Amo16g1895 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 640 IPR013083 -
Amo16g1895 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 732 819 IPR016181 -
Amo16g1895 864 Pfam PHD-finger 494 535 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1895 Amo-Chr16 51107745 51116453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1895 141 855 PHD Transcription Factor Family AT2G36720 53.625 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo16g1895 TDBD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1895 - - gmx:100802562 1238.4