Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1893 ATGGGAAGAGCTCCATGCTGTGACAAGGCTAATGTAAAGAGAGGGCCATGGTCTCCTGAAGAAGATGAGAAGCTGAAGAACTACATAGACAAATATGGCACTGGTGGTAATTGGATTGCTCTTCCACAAAAAGTTGGCTTGAAAAGATGTGGAAAGAGCTGTAGACTTAGATGGCTTAATTATCTGAGGCCTAACATTAAGCATGGTCAGTTCTCTGAAGCAGAAGATAGAGTAATCTGCAACCTCTTTGCTACCATTGGAAGCAGGTGGTCAATAATAGCATCTCAATTACCTGGGAGAACTGACAATGATATCAAGAATTACTGGAACACCAAGCTCAAGAAGAAAATGATGGCCATCCATGATAATAATAATAATAATCTATTATCTTCTTCAATTCTTCAAAGGAAGCCTCCTACTCCCCCTCATCATGAACAAGTTACCCTTTTATCCATGTTGCAAAATAATCCAACATCATCATCATTCATCAGCCATCATGGTCCTGCTGATGGATCATCCTATTCTTCTTCATACTCATCAAGCCTTCTGAGTAGTGGTGGAAATAACTCTTCCACTTCCAATTCCAATTTTCAAGGGCAAGAAAGTAATTTGATGGGACATAGCATGTTTGTGTTTGGGGGTGAAGCTACTGCTAATAGCTGCAGTTCTTCTGATGCTAGCTGCAGCAATAACAACAACAACAATCATGTGATAGAGCATGATCATCATCACCATGGAACTTTTGTTGATCTCTACAATAACAATAATAATAATGGTGGAATATTATGGGGAGAAAATCCATTGGTGGAGGATTATGGCATAGTAGAAGAAATCAAAGAGCTAACAGCCACTACTACTACTACATCTACTACTAATTGTAACAATAACTTTTTGTTAGCTGAAAAGAAGACAGACGAAAGGGTCATGTACTACTATTGA 939 0.3876 MGRAPCCDKANVKRGPWSPEEDEKLKNYIDKYGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSEAEDRVICNLFATIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAIHDNNNNNLLSSSILQRKPPTPPHHEQVTLLSMLQNNPTSSSFISHHGPADGSSYSSSYSSSLLSSGGNNSSTSNSNFQGQESNLMGHSMFVFGGEATANSCSSSDASCSNNNNNNHVIEHDHHHHGTFVDLYNNNNNNGGILWGENPLVEDYGIVEEIKELTATTTTTSTTNCNNNFLLAEKKTDERVMYYY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1893 312 Gene3D - 7 68 - -
Amo16g1893 312 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo16g1893 312 CDD SANT 71 113 IPR001005 -
Amo16g1893 312 Gene3D - 69 137 - -
Amo16g1893 312 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo16g1893 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Amo16g1893 312 PANTHER OS09G0431300 PROTEIN 1 292 - -
Amo16g1893 312 CDD SANT 16 62 IPR001005 -
Amo16g1893 312 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo16g1893 312 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo16g1893 312 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo16g1893 312 MobiDBLite consensus disorder prediction 174 200 - -
Amo16g1893 312 SMART sant 13 64 IPR001005 -
Amo16g1893 312 SMART sant 67 115 IPR001005 -
Amo16g1893 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Amo16g1893 312 PANTHER OS09G0431300 PROTEIN 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1893 Amo-Chr16 50687864 50689426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1893 1 119 MYB Transcription Factor Family AT5G57620 86.555 1.14e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g1893 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1893 K09422 - gmx:778084 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1893 16 50687864 50689426 Amo12g3393 12 123126374 123129092 PCT
Amo12g3393 12 123126374 123129092 Amo16g1893 16 50687864 50689426 PCT