Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1889 ATGGGTCGTGAAAAAACAATCTATGAATGTATCCAAAACGAACGAAAACGTAAAATTTCTTTCATGCAAAGAAAAGATGAAATCATGAAAAAAATTTCAACATTTTTAAAGTTATGTAAAGTTGAAACTTATCTAATTGTACAATCTATAATTGAAAGGTACGAGACTCAAAAGAACAATGAGACACATCCCATGATCTTTGATGGAGAAGAATTTTTCGAGATCAAGAAGATCATGAATGAGGCTAAAATTTCTAAATTGAGAAATAGGATTCTACAACTAAAGTATCCTACGATGGATCCAATCTTTACTACCTTAGATGGAAACCAATTGATGGAGTTCATTGCTTTGGTGAACACTAAAATAAAATTTTGTAAGGAAAGAATTGACATGTTGAAAGAGGATAATCAAGATAATGGTAGCAACTTCAATGTTGACCAAAGTCAAAGTCAACTCAATTTTATGAACAACATTCCTAATCATGATTATGCTATTGATCATGATAATTTGATATATCAAACTCAAAACCCTAATTTTGATCCAAATGTTACTCATCTTGTGGCAAACAATAATGAGGTGATCTTGGATTCTACTAGCCAAGTTAATGTGCCTCTAAGTTGTTCTACAACAAACCAACTTGGGAAAAGAAAAGAGTGTTATTGTGAATTTTACAAATCAAATTGTATAAACATCATAAAAAATCTTTTTTTTTTCTTCGGGGTAGTGAAATCCTTTGCTATTATTATGAATTTGATGAATTTTGTGCTGACGGTGGCTAGTGTGAGTGCAGTGGTACTTCTTCTGAGGAGCGATGTGAAG 819 0.3162 MGREKTIYECIQNERKRKISFMQRKDEIMKKISTFLKLCKVETYLIVQSIIERYETQKNNETHPMIFDGEEFFEIKKIMNEAKISKLRNRILQLKYPTMDPIFTTLDGNQLMEFIALVNTKIKFCKERIDMLKEDNQDNGSNFNVDQSQSQLNFMNNIPNHDYAIDHDNLIYQTQNPNFDPNVTHLVANNNEVILDSTSQVNVPLSCSTTNQLGKRKECYCEFYKSNCINIIKNLFFFFGVVKSFAIIMNLMNFVLTVASVSAVVLLLRSDVK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1889 273 PANTHER PROTEIN, PUTATIVE-RELATED 45 203 - -
Amo16g1889 273 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Amo16g1889 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Amo16g1889 273 PANTHER MADS BOX PROTEIN 10 47 - -
Amo16g1889 273 PANTHER PROTEIN, PUTATIVE-RELATED 10 47 - -
Amo16g1889 273 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Amo16g1889 273 PANTHER MADS BOX PROTEIN 45 203 - -
Amo16g1889 273 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1889 Amo-Chr16 49535617 49541511 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo16g1889 SRF-TF 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1889 - - adu:107476111 348.591