Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1856 ATGGCGAACCAACCTGAATCATCTGATCCGAAGGGAACGAAGAGGGATTTCAGCACTGCGATTCTTGAGCGGAAGAAGGCGCCGAATCGGCTTGTTGTTGACGAGGCCGTCAACGATGACAACTCCGTTGTCGCGCTTCACCCGGACACCATGGAGAAGCTCCAGCTCTTTCGTGGTGACACCATCTTGATCAAGGGAAAGAAAAGGAAAGACACAATCTGTATTGCACTCGCTGATGACACATGTGAGGAACCAAAAATAAGGATGAACAAGGTTGTGAGAAACAACCTTAGGGTTAGGCTTGGAGATGTCGTCTCTGTGCATCAATGTGCTGATGTCAAGTATGGAAAGAGAGTCCACATTCTTCCCGTTGACGACACTGTTGAAGGAGTAACAGGGAATCTCTTTGATGCATATTTAAAACCTTATTTCCTGGAGGCATATCGTCCAGTGAGGAAGGGTGACCTCTTTCTCGTGAGAGGAGGGATGAGAAGTGTTGAGTTCAAGGTTATTGAAACTGACCCATCTGAGTACTGTGTTGTTGCTCCAGACACAGAGATCTTCTGTGAAGGGGAACCCGTTAAAAGGGAAGATGAGAACAGATTAGACGAGGTTGGTTATGACGATGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTCGGGAACTAGTGGAGCTGCCACTGAGGCACCCACAATTGTTCAAGTCTATTGGTGTTAAGCCACCAAAAGGAATTCTGCTGTATGGACCTCCTGGGTCTGGCAAGACTTTAATTGCCCGAGCAGTTGCGAATGAGACTGGTGCTTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAACTGGCTGGTGAGAGTGAAAGCAATCTAAGAAAGGCATTTGAGGAAGCAGAGAAGAATGCACCTTCAATCATATTCATTGATGAGATAGATTCAATAGCTCCAAAGAGGGAGAAGACTCATGGAGAAGTTGAGAGGAGGATTGTTTCCCAACTCTTGACCCTCATGGATGGCCTTAAATCTCGTGCACATGTAATTGTTATTGGAGCTACAAATCGCCCGAATAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGATTTGACAGGGAGATAGATATTGGTGTTCCAGATGAAGTTGGGCGTCTTGAAGTTCTTCGTATTCACACAAAGAATATGAAGCTTTCCGAAGATGTTGATTTGGAGAAGATTGCTAAGGACACCCATGGATATGTTGGTGCTGATCTTGCTGCTTTGTGTACTGAAGCTGCACTTCAATGCATCAGAGAGAAAATGGATGTGATTGACTTGGAAGATGAATCAATTGATGCTGAGATATTGAACTCAATGGCAGTAACAAATGAGCACTTCTCAACTGCTCTTGGCTCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTCGAAAATGTTAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAAAAGTTTGAGAAGTTTGGAATGTCACCTTCAAAGGGTGTCCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACGCTTTTAGCAAAGGCGATTGCCAACGAATGTCAGGCAAACTTCATCAGTGTCAAGGGTCCAGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTCGATGAACTTGACTCTATTGCAACTCAGAGAGGTAGCAGTGTTGGGGATGCCGGTGGTGCTGCTGATAGGGTTTTGAATCAACTTCTTACTGAAATGGATGGGATGTCAGCAAAGAAAACTGTCTTCATAATTGGTGCCACCAATCGACCAGACATCATAGACCCTGCTCTTCTACGTCCTGGCCGTCTAGATCAGTTGATTTATATCCCTCTCCCAGATGAGGATTCACGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTTGACCTTAGAGCTCTTGCGAAGTACACTCAAGGTTTTAGTGGTGCTGATATCACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAAAATATTGAGAAGGACATTGAGAGAGAAAGGAGGAGAAGGGACAACCCAGAGGCAATGGAAGAGGATGTTGAAGACGAAGTGGCAGAAATCAAGGCAGCTCATTTTGAGGAGTCTATGAAGTATGCACGAAGGAGTGTTAGCGATGCCGACATTCGCAAGTACCAGGCATTTGCCCAAACATTGCAGCAGTCAAGAGGTTTTGGAACCGAGTTTCGGTTCGCAGATACTACCTCTGGTGGTACCGCAGCGGCATCCGATCCATTTGCATCTGCTGGGGGAGCTGATGAAGATGATCTTTACAGCGAATTTCGGACGAATTTGGTAGAGTTTTGTGCAACAACGAAGAAAGGATAG 2469 0.454 MANQPESSDPKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADTTSGGTAAASDPFASAGGADEDDLYSEFRTNLVEFCATTKKG* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1856 822 SMART CDC48_2_2 130 196 IPR004201 -
Amo16g1856 822 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 781 - -
Amo16g1856 822 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Amo16g1856 822 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Amo16g1856 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 764 IPR027417 -
Amo16g1856 822 Gene3D - 210 374 IPR027417 -
Amo16g1856 822 Gene3D - 376 467 - -
Amo16g1856 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Amo16g1856 822 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Amo16g1856 822 Gene3D - 8 112 - -
Amo16g1856 822 SMART CDC48_N_2 30 113 IPR003338 -
Amo16g1856 822 Gene3D - 655 763 - -
Amo16g1856 822 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Amo16g1856 822 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Amo16g1856 822 Pfam AAA+ lid domain 673 713 IPR041569 -
Amo16g1856 822 Pfam AAA+ lid domain 397 439 IPR041569 -
Amo16g1856 822 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 767 IPR005938 GO:0016787
Amo16g1856 822 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Amo16g1856 822 Gene3D - 468 651 IPR027417 -
Amo16g1856 822 PANTHER AAA-FAMILY ATPASE 5 781 - -
Amo16g1856 822 CDD AAA 484 651 - -
Amo16g1856 822 Gene3D - 113 209 - -
Amo16g1856 822 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Amo16g1856 822 CDD AAA 211 374 - -
Amo16g1856 822 SUPERFAMILY ADC-like 27 110 IPR009010 -
Amo16g1856 822 SMART AAA_5 514 653 IPR003593 -
Amo16g1856 822 SMART AAA_5 241 377 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1856 Amo-Chr16 46410892 46417530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1856 447 777 Calmodulin-binding Proteins AT3G56690 43.202 2.24e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1856 K13525 - gmx:100791603 1525.38