Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1854 ATGCTTTACCAAACTCCCCATCCTCTTCTCTTTCAATTTCATCCCTTCCCTTCTTCGTCATCGACTCTACCTCTATCTTCGTATCATCTTCTCATTAAGGTGGAAGAAAGAGAAAGGGAAATGGAGTGCATGGTGGAGGGAGCGTTGAAGACGAGTTTTAGAAAAGAGATGGGGATGGGTATWAAATATACCACATCCCCGCAGAGGTCWTTCATGGAAGAACTTCAAAATGGCGCCCCTTCCGACGACTTYTTCGTTGACCAACTCCTTGACTTCTCCCAAGTAGACCAACAAGAAGARCAACAAGAAGAAGAACAAGAGCATAAGAAAGTTGGAGAAGACTCTGCTTGCGTGTCACTCTCGCCGCAACAGACCAACGACGTKGAAGAGACCTTTCCCTCTCTCCCCACCACAGACCTCAACCTTCCGGATGATGTGGCAGACTTGGAGTGGCTCTCTCATTTCGTCGAGGATTCCTTCTCTCAATTCTCTCCTCCCATCGTCCCCGCCGCCGTACCAACCTCAACCCCRCCTGCTCCGCCTCAACCTTGTTTCAACAYCCCCGTTCCTGCCAAGGCGCGTAGCAAGCGAACCCGAACCGGTGTCAGGGTTTGGCCACTCGCCTCACCTTCCTTCGCCACCACTGACTCCTCCTCAACCACYGCCACCGCYACCTCCTCCACCTCTTCTTCCCCTTCCAGCCCCTTGCTAATTTACGCCACAAACCTGTCCCAGACCATGGACCAGGTTAGCTCYGACGCTCCGCCGAAGAAGCCCAAGAAGAAGGCCTCTCCGGAAGGCGGATTTCCGGCACAGGCACCGCGCCGCTGCAGCCATTGCGGCGTCCAGAAGACCCCRCAGTGGAGAACGGGACCMCTCGGGGCGAAAACGCTCTGCAACGCGTGCGGGGTTCGGTACAAATCGGGTCGGCTCTTACCCGAATATAGACCCGCTTGCAGCCCAACGTTCTCCAGCGAGTTGCACTCCAACCACCACCGGAAAGTTCTGGAGATGCGGCGGAAGAAGGAGACTATAGGTGGTGGGGTTGATACCTCCGGTTTGGCCCCTCCGGTTGTTCCCAGTTTTTGA 1089 0.5436 MLYQTPHPLLFQFHPFPSSSSTLPLSSYHLLIKVEEREREMECMVEGALKTSFRKEMGMGIKYTTSPQRSFMEELQNGAPSDDFFVDQLLDFSQVDQQEEQQEEEQEHKKVGEDSACVSLSPQQTNDVEETFPSLPTTDLNLPDDVADLEWLSHFVEDSFSQFSPPIVPAAVPTSTPPAPPQPCFNXPVPAKARSKRTRTGVRVWPLASPSFATTDSSSTTATATSSTSSSPSSPLLIYATNLSQTMDQVSSDAPPKKPKKKASPEGGFPAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETIGGGVDTSGLAPPVVPSF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1854 362 MobiDBLite consensus disorder prediction 95 115 - -
Amo16g1854 362 ProSitePatterns GATA-type zinc finger domain. 277 302 IPR000679 GO:0006355|GO:0043565
Amo16g1854 362 PANTHER GATA TRANSCRIPTION FACTOR 41 345 - -
Amo16g1854 362 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 271 333 - -
Amo16g1854 362 MobiDBLite consensus disorder prediction 171 187 - -
Amo16g1854 362 MobiDBLite consensus disorder prediction 210 252 - -
Amo16g1854 362 Gene3D - 270 344 IPR013088 GO:0006355|GO:0008270
Amo16g1854 362 PANTHER GATA TRANSCRIPTION FACTOR 41 345 - -
Amo16g1854 362 SMART GATA_3 271 325 IPR000679 GO:0006355|GO:0043565
Amo16g1854 362 Pfam GATA zinc finger 277 311 IPR000679 GO:0006355|GO:0043565
Amo16g1854 362 MobiDBLite consensus disorder prediction 171 277 - -
Amo16g1854 362 CDD ZnF_GATA 276 324 IPR000679 GO:0006355|GO:0043565
Amo16g1854 362 ProSiteProfiles GATA-type zinc finger domain profile. 271 307 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1854 Amo-Chr16 45548598 45550300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1854 44 362 C2C2-Gata Transcription Factor Family AT5G66320 44.932 3.13e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo16g1854 GATA 5.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1854 - - aprc:113869559 349.362