Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1831 ATGGGGGAGGGGCAGCAAGACGATGGAGTAGTCGACATCTTGATTGACTTGGTCAACGAGATTCGTTCCATCTCTGATTTCAGGCCTATGCTCAAGAAGCACTTTTCCAACTTAGCCAGAAGGCTCAATCTTCTCACCCCTTTCTTCCAAGAAATCAGCGACTTCAACCCTGCTCTTCTCCCTCCCAACACTTTCAATGCCCTGCTGAGCTTAAGGGACGCTCTTCAAGCCGCCAGGGATTTCCTCTCCTTCGCTGCCAATTGCAGTAAGATTTTCATGGTTCTTGAGAGGGACCAAATTATGACTAAGTTCTATGAGGTCTCGGCTAGGTTGGAGCAGTCTTTGGCGGCGGTTTCATGTGATCAACTCGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTCAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATACCAAGTTGTATGAGGATGTGTTGTCCCTCTATAACAATAACACTGATGTAGCTACCAATCCAGATGTTTTTCGGCAGTTAGCAGAGAAGTTGGAATTGATGGGAATAACTGATCTCACACAAGAGTCACTTGCCCTGCACGAGATGGTGGCCGTAAGTGGTGGCGATCCGGCCGGACGCATTGAGAAGATGTCCATGCTATTGAAGAAGATAAAAGATTATGTTCAAACTGAAAATCTAGTTGTGTATGATACTGTAGGAGGAAAGGGCCATTCTTCAAAAACCAGCAAACAAGTCTCAAATGAAAGGAATCATCAGACGCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTAGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGAGCCTCACTAGTACCGTCCTCACACCCAACTATGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATGGAACCACCGAGACGACCAAGCAATTCCGAACCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAYCGAAGCAAGATTGAAACTCTTCTCCAAAGGCTGACTTGTGGCAGTCCAGAAGAGCGAAGAACAGCTGCAGGGGAGATCCGGCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCACTTCTGAATCTTTCTATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATTGATGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCTCCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCAATCAGGGCCGGTGCCATTCCCACATTGATGAAACTTGTAACAGAACCCAATGGAAGCATGGTGGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCWGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCCTTTTTGGTACAGTTTATTGCAAATGGTTCACCCAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCTGGAGATCAACAATATCTGGCTCAGGCCCGAGAGCTCGGRGTGATGGATCCTTTGTTGGATTTGGCTCAAAATGGCACAGATAGAGGAAAAAGGAAGGCAGCACAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGASTCAAAKTGAACTGKACCATGTTGCACATACCAGCATTGATAATACCTYATATGTMTTTGTTCTATGCTTTTTGATCATTTGA 2001 0.4588 MGEGQQDDGVVDILIDLVNEIRSISDFRPMLKKHFSNLARRLNLLTPFFQEISDFNPALLPPNTFNALLSLRDALQAARDFLSFAANCSKIFMVLERDQIMTKFYEVSARLEQSLAAVSCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDTKLYEDVLSLYNNNTDVATNPDVFRQLAEKLELMGITDLTQESLALHEMVAVSGGDPAGRIEKMSMLLKKIKDYVQTENLVVYDTVGGKGHSSKTSKQVSNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLEAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGMEPPRRPSNSEPSKSVSAYAPADRSKIETLLQRLTCGSPEERRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGAIPTLMKLVTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVQFIANGSPRNKENAAAVLVHLSSGDQQYLAQARELGVMDPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQXQXELXHVAHTSIDNTXYVFVLCFLII* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1831 666 SUPERFAMILY RING/U-box 249 336 - -
Amo16g1831 666 Pfam Armadillo/beta-catenin-like repeat 388 427 IPR000225 GO:0005515
Amo16g1831 666 Pfam Armadillo/beta-catenin-like repeat 471 509 IPR000225 GO:0005515
Amo16g1831 666 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Amo16g1831 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Amo16g1831 666 PANTHER U BOX DOMAIN-CONTAINING 8 649 - -
Amo16g1831 666 Gene3D - 345 654 IPR011989 -
Amo16g1831 666 MobiDBLite consensus disorder prediction 242 258 - -
Amo16g1831 666 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 649 - -
Amo16g1831 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Amo16g1831 666 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Amo16g1831 666 Gene3D - 9 121 IPR036537 GO:0007166
Amo16g1831 666 MobiDBLite consensus disorder prediction 242 262 - -
Amo16g1831 666 SUPERFAMILY ARM repeat 359 639 IPR016024 -
Amo16g1831 666 MobiDBLite consensus disorder prediction 331 351 - -
Amo16g1831 666 SMART arm_5 470 510 IPR000225 GO:0005515
Amo16g1831 666 SMART arm_5 429 469 IPR000225 GO:0005515
Amo16g1831 666 SMART arm_5 552 592 IPR000225 GO:0005515
Amo16g1831 666 SMART arm_5 511 551 IPR000225 GO:0005515
Amo16g1831 666 SMART arm_5 594 634 IPR000225 GO:0005515
Amo16g1831 666 SMART arm_5 388 428 IPR000225 GO:0005515
Amo16g1831 666 Pfam Neurochondrin 521 639 IPR008709 -
Amo16g1831 666 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Amo16g1831 666 CDD RING-Ubox_PUB 265 307 IPR045210 -
Amo16g1831 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 399 441 IPR000225 GO:0005515
Amo16g1831 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1831 Amo-Chr16 43792419 43795316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1831 14 641 U-box Gene Family AT3G46510 67.670 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1831 - - gmx:100812160 961.444