Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1827 ATGAGTCATGGTGCCCCTCAGTACCACAAGGACGAGGTGGTTCGTGATCTGTCTTCTGAAACTAATAATACTCTGGAGAACGGACCTGTTATGCACAACATGATTGCTACAAAAGCTGACGTAGGGCATTCCACGTCAAGGTGTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGTTCATGTAAAAGATAAAAAAGCTGTTGGAGAACTTGTATGTTTGCAGTGCTTGCATGGTAGTGAACTCATTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTTTGGAATTGTGCATGGTGTGTTAAGAAAAAGCTAGATCTTGGTGCGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATTCTAGAGAAGGCATTTCGAAAAACAATGTGACGGAAAAGGAGTACTTTGTCAAGTATCTGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAACACAAATGCTTGAAGAGGGGCCAAAAGTTTTGTCAGCATTTAAGAGGAAGCGCCGGGTTATCAAGTGGAAAAAAGAATGGAGTATACCCCACCGCTTGTTGCTAAAAAGAGCAATTGTGTTACCAAAGCAAAATAAAGAACATTTAGATGGGCATGATAACAATTATTCAGTTGGCTGTTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATGTTACATGGGAACTAGATAGTGCTTCCTTTTTGACGTCGTCTGAAGGCATGAAACTCAAAAATGATTATGAAAGTCGTCGTCTTCAAAAGGGGATGGATGGAGACATTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTACCTGTACCGCCTTCAGGTAATTCAGTGGCAGTTTCTAGTCAGCATTTGAGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAGGTCAGAGTGCTGTCATTGTAGATGATAAGATTGACCAGGAGCGGGTTATGAAGGTGATGTCATTTATATTGTCATTGCATTGTAAGGTGACAAGGCCTTTCCTCATTGTCTCAACTTCTGCTGCTCTTGCTGTGTGGGAAAGAGAGTTCTTACATTTGGCTCCATCTGCAAATCTTGTCATTTACAAGGGAAACAAAGATGTACGGAGAAGCATAAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCGTCTGATATTATCGTTGAGGACTTAAAGGAACTACGATGCATTTTGTGGGAAGCAATAATAGTTGATGAATGCCAGCGACCTAGAATTTTGGAACACCTTGACAATATCAAGATTTTGACAACAAAGTTGAGGCTCCTGGTTGTTAGCGGACAGATCAAGGATGATCGAGCTGATTATGTCAAAATGCTTTCCTTCCTCAACTCTGAAAATCATGTGTTAAATACTACTGAAACAGAGCCATTAGTCTCTGATAGCATTTCCGATTTGAAAAGCAAATTGGATCAATATGTGGCATTTAGAACAAAAACAGGGTCCACTAGGTTTGCAGAGTTTTGGGTTCCTTCCAAGCTTTCCAGTTTGCAACTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCTGACAAGGTCAATGCTCTCCGCGGCCTCCTTAACTCAACAAGGAAGTGCTGCAACCATCCCTTTCTCTTGGACTCGTCACTATATAATTCCGTCAATAAAGGTCTGTCTGTTGAAGAGCAGTTGAATATTGGGATAAAAGCAAGTGGCAAATTGCAGCTTCTTGAAAAAATCCTTTTGAAAGCAAGAAGCCGTGGTTTAAGAGTGATGATATTATTTCAGTCAACTAGTGATTTGACATCGATTGGAGATATTTTGGATGATGTACTTTGTCGGAGATTTGGCGAACATTGTTATGTACGATATGCTGCTGGGTATGCGCCCAAAGCGAAGCAAAGTGCTCTAGACAAATTTAATGATGGCGAAAGAGCATTTGTCTTCTTGTTGGAAAGTCGTGCTTGCCTCCCTAGTGTTAAGCTTTCCTCTGTTGATGCCATTATATTGTTTGACAGTGACTGGGACCCAGAAAATGATTTAAGAGTCTTACAACGTATGCCTATAAGCTCACAGTTCGAACAGTTAACGGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTAGTAGTATCCAGTTGGTTAACAATAGTACCTCTCATGCCCTGCTCAGATGGGGTGCCACCTATCTTTTCAGTAAGCTTGATGACTTACATGGCAGCAACACTCCAGTCTTTGCTCAAGACATTGCCTCTGATCAGTCACTTCTACATGATGTAATCTGTGAGTTATCAACCGTATTTTCTGGTGGAAGCAGTGACATTGATAATCATGGATTGTCCTTCATAGCGAGAGTATGGCAGAAAGGAGGGGAATATGCAAAGAACATTTTATTGCATGGCGAAAGAGTGATGAAGGAATTGGATGATGGTTTTGATGTTTTTTCTTGGAGTAATCTCCTTCAGGGAAGGAGTCCTAGATGGAAATTGTTGTCTGTTTCATCTCAAAGGATCAGAAAACCTGCCAATCACTTTGATCACAAAGCAAAGGAATCTGAAAGTGAAAATAATGCTGATAATAGAAAGAAGAGGAAAGTGTCTGAGGGTAACGTTGATTCCAAAAGGAAGGAAGTGTCCAAGGATACTACAGTCACAAGGAAGGGGAAAGTGCCAGATCATGCCAATTCCAAATATTTGAAAAAAAGTTTGAAGAACAAGAAGCTAAACACTAGTAATGTAGATGAGTTCTTGCCAAAGCCAGATTTAGCAGGTCTTTGTGATGTTCTACAACTTCCGAAAAATGTCAAGGCTCTTGGTGCAAGGCTTCTTGAGCACATATTGGAATATTTCAACGTTAATTGGCGAGACGTTTCTACCATGCAGGCATTTGAATTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAATTTTGATAAGCAAGGTTCACTTGCACTTGCGAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCTATGTTTACTCTAAACTGCTGAAATTTAAGAAGGAATTTTCAAGTTGTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGCGAAACACCTGGGTTGACAGATTTGGTGGAGGATATGCAAAATGGTTTTCAGGGTCCTCTAGAATCCGACACATATAGACATGATCTTCAAAGGGAATCTCCCACAACTGTGCTAGCTACTCATTATCAGACTTGTGCAGAAAATTTTCAAATCAGACTTACAGATATTGGAAGTTGTCCTCAAAAGTCATCTGGCACTTTCCCTGCCAAAGCATATGCTATCCCCGTGACATCCAAAGCTTCTTTCTTGGAGCATCAGAGTGAGGTCTTCGATTCAAGTGATGATCCTTGTAATGTCAACCCTGGCACTGGTTCTTTGGAAAATCAAATTAATGGCGATGATTTTGAAGTTTCTCTAATAAATAATAATGAAGTGGTTGAGACAATCACTTGCAGTACTGCTGATGTTCCTGAGGTCAACCAGCATTGCAGTGTAGTGAGTGCTGTCCATGGTGAGTCTATTATGGATTTTCCTGAGACTACTTTCCCATATATGGAACCATCAAATACAGATCTACTGCCACTGCCTCAGGAGGATGTTACATCTTTTTTGGAGAATATTTCAATTGGTGAAGTCTTGCCTTTTGATGAAATATTTTTTGAAAATTATAACCTTCATGAGGATGAACCAACATTACAAGTACCAGATGACCCACCTGAATCAGTCCCAGACCCATTGCAAATTGAAATGGAGAGAATAAAAAAGGCGACTGAAGAAGCTAACAGGATACGCCAGCAAAAATTACACCAGCTTGAGTCAGACCATGGTATGGAGGTTAAAGAATTGGTTGCAAAGTATCAAATGTTGCTTCAGAGTATCAGTACTGAAGTAGCATTGCAAAAAAAGGAACTTGACGCATATTATAAAACAGTTCAAAAGAATAAGTTGTTGGCTTCTGTTTTGGACCACAATCACAAGGAATATAAAAGAGAAGCAGTTCTATTCGCAGAACAAGGCTTACCCTCTGCAATGGGAACACCTAGCTCCTCAAGTACTCAACAAAGAGAGCACCATCCCCCTCTTATGCCTGATCAAAGACTCGAACAGTGTCTACCGATGATTCCCCCACACTTGTTTACTCCAACGGAAGCGGTTAATGCTCTGGAGATTGCTAAGACTTCAACAGCCATTCCAGAAATGAGCCCAGTTAGAGAATGTATTGATCCCATGATTCAGTCCTATGTAAACTTGAATTACGGCTGTTATTCAGTGGCCTCAAACCCCCCTCTTGAAGCCTCTAATTCAGTGCCTATCATGCCAAGTCTAACTAGTGGAATACCAGAACAGCAATTGCCACTACATTTACCTCAATGGCAATATCAGTAA 4542 0.4075 MSHGAPQYHKDEVVRDLSSETNNTLENGPVMHNMIATKADVGHSTSRCGGSEQCKDNTQTGVHVKDKKAVGELVCLQCLHGSELICCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLDLGAYSISEGVESILDSREGISKNNVTEKEYFVKYLGLAHAHNRWIPETQMLEEGPKVLSAFKRKRRVIKWKKEWSIPHRLLLKRAIVLPKQNKEHLDGHDNNYSVGCFEWLVKWSGLGYDHVTWELDSASFLTSSEGMKLKNDYESRRLQKGMDGDINEERKASFAELPVPPSGNSVAVSSQHLSYVNKLCMCWHKGQSAVIVDDKIDQERVMKVMSFILSLHCKVTRPFLIVSTSAALAVWEREFLHLAPSANLVIYKGNKDVRRSIRTLEFYNDDNGILFQILLSSSDIIVEDLKELRCILWEAIIVDECQRPRILEHLDNIKILTTKLRLLVVSGQIKDDRADYVKMLSFLNSENHVLNTTETEPLVSDSISDLKSKLDQYVAFRTKTGSTRFAEFWVPSKLSSLQLEQYCSLLLSDRTLLCSAQKSDKVNALRGLLNSTRKCCNHPFLLDSSLYNSVNKGLSVEEQLNIGIKASGKLQLLEKILLKARSRGLRVMILFQSTSDLTSIGDILDDVLCRRFGEHCYVRYAAGYAPKAKQSALDKFNDGERAFVFLLESRACLPSVKLSSVDAIILFDSDWDPENDLRVLQRMPISSQFEQLTVFRLYSSFTVEEKVLMLAKEGSSIQLVNNSTSHALLRWGATYLFSKLDDLHGSNTPVFAQDIASDQSLLHDVICELSTVFSGGSSDIDNHGLSFIARVWQKGGEYAKNILLHGERVMKELDDGFDVFSWSNLLQGRSPRWKLLSVSSQRIRKPANHFDHKAKESESENNADNRKKRKVSEGNVDSKRKEVSKDTTVTRKGKVPDHANSKYLKKSLKNKKLNTSNVDEFLPKPDLAGLCDVLQLPKNVKALGARLLEHILEYFNVNWRDVSTMQAFELSVCWLAASLLKHNFDKQGSLALAKVHLNFNCEEEEVTYVYSKLLKFKKEFSSCLQSGICVEKCTSDCETPGLTDLVEDMQNGFQGPLESDTYRHDLQRESPTTVLATHYQTCAENFQIRLTDIGSCPQKSSGTFPAKAYAIPVTSKASFLEHQSEVFDSSDDPCNVNPGTGSLENQINGDDFEVSLINNNEVVETITCSTADVPEVNQHCSVVSAVHGESIMDFPETTFPYMEPSNTDLLPLPQEDVTSFLENISIGEVLPFDEIFFENYNLHEDEPTLQVPDDPPESVPDPLQIEMERIKKATEEANRIRQQKLHQLESDHGMEVKELVAKYQMLLQSISTEVALQKKELDAYYKTVQKNKLLASVLDHNHKEYKREAVLFAEQGLPSAMGTPSSSSTQQREHHPPLMPDQRLEQCLPMIPPHLFTPTEAVNALEIAKTSTAIPEMSPVRECIDPMIQSYVNLNYGCYSVASNPPLEASNSVPIMPSLTSGIPEQQLPLHLPQWQYQ* 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1827 1513 MobiDBLite consensus disorder prediction 1393 1415 - -
Amo16g1827 1513 Gene3D - 520 749 IPR027417 -
Amo16g1827 1513 ProSitePatterns Zinc finger PHD-type signature. 75 118 IPR019786 -
Amo16g1827 1513 SUPERFAMILY Chromo domain-like 91 193 IPR016197 -
Amo16g1827 1513 Pfam SNF2-related domain 337 574 IPR000330 GO:0005524|GO:0140658
Amo16g1827 1513 MobiDBLite consensus disorder prediction 879 935 - -
Amo16g1827 1513 Gene3D - 1295 1375 - -
Amo16g1827 1513 SUPERFAMILY Chromo domain-like 230 254 IPR016197 -
Amo16g1827 1513 ProSiteProfiles Zinc finger PHD-type profile. 72 121 IPR019787 -
Amo16g1827 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 480 IPR027417 -
Amo16g1827 1513 SMART PHD_3 74 119 IPR001965 -
Amo16g1827 1513 MobiDBLite consensus disorder prediction 880 935 - -
Amo16g1827 1513 CDD CD_CSD 134 187 - -
Amo16g1827 1513 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 36 1058 - -
Amo16g1827 1513 Pfam Chromo (CHRromatin Organisation MOdifier) domain 134 188 IPR023780 -
Amo16g1827 1513 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 1058 - -
Amo16g1827 1513 ProSiteProfiles Chromo and chromo shadow domain profile. 204 249 IPR000953 -
Amo16g1827 1513 SMART chromo_7 197 270 IPR000953 -
Amo16g1827 1513 SMART chromo_7 131 190 IPR000953 -
Amo16g1827 1513 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1291 1483 - -
Amo16g1827 1513 CDD SF2_C_SNF 602 718 - -
Amo16g1827 1513 Coils Coil 1298 1318 - -
Amo16g1827 1513 Gene3D - 305 519 IPR038718 -
Amo16g1827 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 750 IPR027417 -
Amo16g1827 1513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 132 IPR013083 -
Amo16g1827 1513 Gene3D - 210 262 - -
Amo16g1827 1513 ProSiteProfiles Chromo and chromo shadow domain profile. 132 197 IPR000953 -
Amo16g1827 1513 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1291 1483 - -
Amo16g1827 1513 MobiDBLite consensus disorder prediction 1394 1410 - -
Amo16g1827 1513 Gene3D - 133 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1827 Amo-Chr16 43352314 43379123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1827 600 742 RAD5 or RAD16-like Gene Family AT5G43530 27.972 3.87e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo16g1827 SNF2_N 7.4e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1827 K11643 - gmx:100813574 1224.92