Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1824 ATGGAACAAATCACCATGACCAACGGCAACGGTAACGGCCACCTCCACCACCAGAACCACAATGACTCATTCTGCTTGAAAACCGCCACAACCACCAATAATAACGGCAGTGACCCGTTGAATTGGGGAGCGGCCGCAGAGGCACTGAAGGGGAGCCACCTGGATGAGGTGAAGCGCATGGTAGCGGAGTACCGGAAGCCGGTGGTGAAGCTGGGCGGAGAGACGCTGACGATATCTCAGGTGGCGGCAATCGCGGCGCACGACCAAGGTGTGACCGTTGAGCTGTCGGAATCGGCGAGGGCGGGCGTTAAGGCCAGCAGCGATTGGGTTATGGACAGCATGAACAACGGCACTGACAGTTACGGCGTCACTACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTCCAGAAAGAGCTCATCAGGTTCTTGAATGCTGGAATATTTGGCAATGGCACAGAATCAAGCCACACATTGCCACACACGGCAACGAGAGCAGCAATGTTAGTGAGGATCAACACTCTTCTCCAAGGCTACTCTGGCATCAGGTTTGAAATTTTGGAAGCCATAACCAAGCTCTTGAACACCAACATCACACCATGCTTGCCACTCCGCGGCACAATCACAGCGTCCGGGGACCTCGTCCCACTCTCATACATAGCGGGACTGCTCACCGGAAGGCCCAACTCGAAAGCAGTGGGGCCATCCGGGGAGCTGCTCAATGCCAAGGAGGCATTCGAGTTGGCCGGAATCAACGCCGACTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCACTTGTCAACGGCACCGCAGTGGGTTCCGGCCTGGCCTCTATAGTTTTGTTCGAGGCGAACGTGCTTGCGGTTTTGTCGGAAGTTCTTTCGGCTATTTTCGCCGAAGTGATGCAGGGTAAGCCAGAGTTCACTGATCACTTGACTCACAAGCTAAAACACCACCCTGGCCAAATTGAAGCAGCTGCTATAATGGAACACATTTTGGATGGAAGCTCATACATGAAAGCCGCTAAGAAGTTACATGAAACGGATCCATTGCAGAAGCCGAAGCAAGATCGTTACGCCCTTAGAACTTCGCCGCAATGGCTAGGTCCTCTTGTGGAAGTGATTAGGTTTTCAACCAAGTCGATAGAGAGAGAGATTAACTCTGTTAATGACAATCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACGCGTTTGGCTTTGGCTTCGATAGGAAAACTCATGTTCGCGCAATTTTCGGAACTTGTCAATGATTTCTATAACAACGGCTTGCCTTCGAATCTCTCTGCTGCTAGGAATCCAAGCTTGGATTACGGATTCAAAGGTGCCGAAATTGCAATGGCTTCTTACTGCTCTGAGCTTCAATACCTTGCGAATCCGGTAACCAGCCATGTGCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCGTTGGGTTTGATTTCTTCTAGAAAGACCAATGAAGCTATTGAGATTCTGAAACTCATGTCTTCCACTTTCTTGATGGCGCTTTGCCAAGCCATTGACTTGAGGCATCTAGAGGAGAATTTGAAGAACGCTGTCAAGAACACTGTCAGCTTAGTCGCCAAGAGATCGCTTACCACCGGTGTTAACGGGGAGCTTCATCCTTCAAGATTCTGCGAAAAGGATTTACTCAAAGTGGTTGATAGGGAGCATGTTTTCACCTACATTGACGATCCTTGCAGCGCTGTTTACCCGCTGATGCAGAAGCTGAGGCAAGTGCTTGTGGACCACGCTTTGGCCAATGCAGAGAGTGAGAAGAACGCAAACACCTCCATCTTCCAGAAGATTGCGATCTTCGAGGACGAGTTGAAGGCCGTGCTGCCAAAGGAGGTTGAGGGAGCTAGAATCGCTTATGAGAGTGGAAACTCAACGATCCCAAACAAGATCAAGGAATGCAGGTCCTACCCACTTTACAGGTTTGTCAGGGAGGAATTGGGAACCGGTATGCTCACCGGGGAAAAGGTTAGGTCACCGGGCGAAGAATTTGACAAGGTTTTCACAGCCATGTGCCAGGGGAAGATCATTGATCCTCTACTTGAATGCCTTGGAGAGTGGAACGGTGCTCCTCTTCCTATTTGTTAG 2190 0.5059 MEQITMTNGNGNGHLHHQNHNDSFCLKTATTTNNNGSDPLNWGAAAEALKGSHLDEVKRMVAEYRKPVVKLGGETLTISQVAAIAAHDQGVTVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGELLNAKEAFELAGINADFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAARNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLMALCQAIDLRHLEENLKNAVKNTVSLVAKRSLTTGVNGELHPSRFCEKDLLKVVDREHVFTYIDDPCSAVYPLMQKLRQVLVDHALANAESEKNANTSIFQKIAIFEDELKAVLPKEVEGARIAYESGNSTIPNKIKECRSYPLYRFVREELGTGMLTGEKVRSPGEEFDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1824 729 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 38 718 IPR005922 GO:0005737|GO:0006559|GO:0016841
Amo16g1824 729 Pfam Aromatic amino acid lyase 76 552 IPR001106 -
Amo16g1824 729 Gene3D Fumarase/aspartase (Central domain) 276 724 - -
Amo16g1824 729 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 29 729 - -
Amo16g1824 729 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 211 227 IPR022313 GO:0016841
Amo16g1824 729 SUPERFAMILY L-aspartase-like 38 729 IPR008948 GO:0003824
Amo16g1824 729 PANTHER HISTIDINE AMMONIA-LYASE 29 729 IPR001106 -
Amo16g1824 729 Gene3D - 29 275 IPR024083 -
Amo16g1824 729 Gene3D - 542 663 IPR023144 -
Amo16g1824 729 CDD PAL-HAL 74 539 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1824 Amo-Chr16 42615156 42621076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1824 35 729 Monolignol Biosynthesis Gene Families AT2G37040 85.180 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1824 K10775 - gmx:100811101 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1824 16 42615156 42621076 Amo19g3291 19 144573406 144580264 ECH
Amo16g1824 16 42615156 42621076 Amo16g1824 16 42615156 42621076 ECH