Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1820 ATGAAGATTATTCATTCATGTTTTTCTACTTGTTTCTCTGTCAAAGAAGAAACCAAACAAGAAGAAGAGCGGAATAAGGAAGACGAGAGTGATGAAAGCTTTCGGGTCTTCACTTACAGGGAATTGGCATCAGCCACCCGTGGTTTTCATCCCTCTCACAAAATTGGAGAAGGAGGATTTGGTTCTGTCTACAAGGGGGGGCTCCGGGATGGGACATTGGTGGCAGTGAAAGTGCTTTCCATAGAGATGGAGTCCATGCGAGGAGAGAGGGAGTTTGTGGCTGAATTGGCTACGCTTGCAAATATCAAGCACCAAAATTTGGTGATTCTTAGAGGGTGCTGTGTAGAAGGAGCAAAAAGATATCTAGTCTATGATTACATGGAGAACAACAACCTTCACCACACTTTCTTAGGTTCGGAGGAAAGTAGGATGAGATTCAATTGGGAAGCAAGGAAGGAAGTGTCCATAGGTGTGGCCTCTGTTCTTGCGTTTCTTCATGAGGAACTTAAGCCTCATATTCTGCATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCAAAGGTCTCGGATTTTGGTCTCGCAAAGCTACTAAGAGATGACAAGTCTTATATCAGCACTCGAGTTGCTGGGACATTGGGTTATCTTGCTCCAGAGTATGCTAGTTCCGGACAAGTGTCGCGAAAATCAGATGTTTACAGCTTTGGAGTGCTACTCTTAGAAATTATTAGTGGAAGACCCGTGGTTGGTGCTTATGAAGACATGGAACGTTTCATAGTAGAGAAGGCTTGGGCAGCATATGGAGAGAATGATCTATTAAAAATGGTTGATCCAGTGCTAGATATGAACTATCCTGGGGAGGAGGCGAAACGATTCCTCATGGTGGGTTTGCTTTGCGTTCAAGAAACTGCAAAGATTAGACCGCGGATGCCAGAGGTTGTAGACATGTTGAAGAACAAAAAGGACATGGAATGTGTACAGATTTCGAAACCAGGTTTTGTTGAGGATCTAAGGAACATTAGAATCAGGCAGGAAGTAATGCACTCATCGGAAGAATCAAGTTCTGGTGGAGCAACATTTGCAAGTAGTTCATCATTGACTACTTCTACTCTTGCCCGTTAA 1134 0.4339 MKIIHSCFSTCFSVKEETKQEEERNKEDESDESFRVFTYRELASATRGFHPSHKIGEGGFGSVYKGGLRDGTLVAVKVLSIEMESMRGEREFVAELATLANIKHQNLVILRGCCVEGAKRYLVYDYMENNNLHHTFLGSEESRMRFNWEARKEVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDDKSYISTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIISGRPVVGAYEDMERFIVEKAWAAYGENDLLKMVDPVLDMNYPGEEAKRFLMVGLLCVQETAKIRPRMPEVVDMLKNKKDMECVQISKPGFVEDLRNIRIRQEVMHSSEESSSGGATFASSSSLTTSTLAR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1820 377 CDD STKc_IRAK 55 323 - -
Amo16g1820 377 SMART serkin_6 49 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1820 377 Pfam Protein kinase domain 50 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1820 377 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Amo16g1820 377 MobiDBLite consensus disorder prediction 352 377 - -
Amo16g1820 377 Gene3D Transferase(Phosphotransferase) domain 1 127 335 - -
Amo16g1820 377 Gene3D Phosphorylase Kinase; domain 1 9 126 - -
Amo16g1820 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Amo16g1820 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 369 - -
Amo16g1820 377 MobiDBLite consensus disorder prediction 353 377 - -
Amo16g1820 377 SUPERFAMILY Protein kinase-like (PK-like) 30 335 IPR011009 -
Amo16g1820 377 ProSiteProfiles Protein kinase domain profile. 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1820 377 PANTHER RECEPTOR-LIKE KINASE 6 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1820 Amo-Chr16 41651059 41653803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1820 19 370 Receptor kinase-like Gene Family AT1G07650 44.658 1.20e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo16g1820 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1820 - - gmx:100813945 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1820 16 41651059 41653803 Amo12g3352 12 122697265 122698960 PCT
Amo12g3352 12 122697265 122698960 Amo16g1820 16 41651059 41653803 PCT