Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1817 ATGGGTGGCAAGGACGATTCTGAGTTATGGATGGTGGTGGGTGGCGCGGTGCAACGCGGTGTTGGACCACCGTGTATGGATTTAGAAAGTTGTTCCTTTAAAAATCCAGGACAGATGGTGCAACAACAAGTTTCAAGTTCTGTTCAGACTTACAAGGTTAGCTCTTTGGATAGCAAGAAGTCTTTAAAGTCTAGTTTTCTTTCTTTCATTGGAGCACATGAGATTTTCATGCCAGAGACATGGAAAACAGCATTGACTGAGTTAGTTGCAACTGCTTCTCTAATGTTCACACTGACATCATCAATCATAGCATGTTTGGATTCACATGAAGTTGCTCCAAAGCTTCTAGTCCCTCTTGCAGTGTTCATCATAGCCTTCTTGTTCCTAATAGTCACAATTCCACTCTCTGGAGGTCACATGAGTCCTGTTTTCACATTCATAGCAGCACTAAAGGGTGTTGTTACTCTTGTACGTGCACTAATTTATGTCATAGCACAATGCATTGGTTCAATTATTGGTTTCATTATGCTAAAATGTGTCATGGATCCAAAATTGGAACACAAATATTCATTGGGAGGATGTGCAATTGGTAATGATAGTGATAAAGGACTAGGATCAAAGCCACAAGTTGCATTGTTAGTAGAATTTTCATGCACCTTTTTGGTGCTATTTATTGGTATTACCTTGGGATTTGATAAGAAAAGGTCAAAGGAATTAGGATTACCTATGGTGTGTGTTGTGATTGCTGGGGCAATGGCATTAGCAGTGTTTGTGTCTATAACTGTTACTGGGCAACCGAGCTATGCAGGTGTTGGACTTAACCCAGCAAGATGTTTAGGCCCAGCTTTACTAAAAGGTGGATTATTGTGGAATGGACATTGGATTTTTTGGGTTGGGCCTTTCTTGGCCTGTATAACATATTATGGAGTATCTATTAATTTGCCAAAGGAGAGTATCACTTTGGAAAATGAAGAATATGATGTGTTGAGTTTAGCTTTGGGCCATAGTAAGAGTATTTCTAGGAGTGCTGTCTCAAATGATCTTCAAGTTTGA 1053 0.3989 MGGKDDSELWMVVGGAVQRGVGPPCMDLESCSFKNPGQMVQQQVSSSVQTYKVSSLDSKKSLKSSFLSFIGAHEIFMPETWKTALTELVATASLMFTLTSSIIACLDSHEVAPKLLVPLAVFIIAFLFLIVTIPLSGGHMSPVFTFIAALKGVVTLVRALIYVIAQCIGSIIGFIMLKCVMDPKLEHKYSLGGCAIGNDSDKGLGSKPQVALLVEFSCTFLVLFIGITLGFDKKRSKELGLPMVCVVIAGAMALAVFVSITVTGQPSYAGVGLNPARCLGPALLKGGLLWNGHWIFWVGPFLACITYYGVSINLPKESITLENEEYDVLSLALGHSKSISRSAVSNDLQV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1817 350 PRINTS Major intrinsic protein family signature 255 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 PRINTS Major intrinsic protein family signature 121 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 PRINTS Major intrinsic protein family signature 158 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 PRINTS Major intrinsic protein family signature 82 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 PRINTS Major intrinsic protein family signature 294 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 PANTHER AQUAPORIN-LIKE 51 342 - -
Amo16g1817 350 Pfam Major intrinsic protein 78 303 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo16g1817 350 Gene3D Glycerol uptake facilitator protein. 38 324 IPR023271 -
Amo16g1817 350 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 51 342 - -
Amo16g1817 350 SUPERFAMILY Aquaporin-like 77 306 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1817 Amo-Chr16 41544577 41548939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1817 133 326 Major Intrinsic Protein MIP AT1G17810 31.863 2.43e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1817 K09866 - gmx:100804160 436.032