Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1815 ATGTCTTTCATTGGCACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACTGTGTACCCTGTTGATCAGTTATCTGCTGATGGCACTGCATACCATAAAGCTTGTTTTAGATGCTCTCATTGCAAGGGAACTTTAAAGCTGAGCAACTATTCATCAATGGAAGGTGTCCTATACTGTAAGCCTCATTACGAGCAGCTCTTCAAGGAGACGGGCTCGTTCACCAAGAATTTCCAGTCATCTGCTAAGTTAGCTGACAAGGCAACTCCCGAGCTGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACACAAGAAAAGTGCGCTACATGTGGCAAAACTGCTTATCCGTTGGAAAAGGTAACAGTGGAAGGGCAGGCATATCACAAATCATGTTTCAAGTGTTCTCACGGCGGCTGTCCCATAACGCCGTCGAATTACGCAGCCCTCGAGGGCATTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGCAGCTATAACCATCTTGTTAAGTCAGCATCGATCAAACGGGCAGCGACCTCTGTTCCAGATTCTTAA 570 0.4614 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFTKNFQSSAKLADKATPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLVKSASIKRAATSVPDS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1815 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Amo16g1815 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Amo16g1815 189 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 189 - -
Amo16g1815 189 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Amo16g1815 189 SMART lim_4 9 61 IPR001781 -
Amo16g1815 189 SMART lim_4 107 159 IPR001781 -
Amo16g1815 189 CDD LIM2_SF3 108 168 - -
Amo16g1815 189 PANTHER OS06G0237300 PROTEIN 1 189 IPR045268 GO:0051015
Amo16g1815 189 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Amo16g1815 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Amo16g1815 189 Pfam LIM domain 10 65 IPR001781 -
Amo16g1815 189 Pfam LIM domain 108 163 IPR001781 -
Amo16g1815 189 Gene3D Cysteine Rich Protein 102 172 - -
Amo16g1815 189 Gene3D Cysteine Rich Protein 4 74 - -
Amo16g1815 189 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Amo16g1815 189 CDD LIM1_SF3 6 68 - -
Amo16g1815 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1815 Amo-Chr16 41395329 41397925 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Amo16g1815 LIM 3.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1815 K09377 - gmx:100809121 377.867