Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1811 ATGTTKAATGAGACAGAATTATTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGTAGTAAAGGCAGATGCATCTCCTAGTAATACCAATGGATCSGATGAAACTACAACATCTAATACCAGAAACTCGCAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTAAAAGTTGTCAAGCAGATTTTGTGGGCRAATGGAATGAGGTATGAGTTGCAGGAGATATACGGTATTGGAAGTTCAACAGAGACTGGTGCAGATGAGAGTGACCAGGGGAAAGAATGTGTCATCTGTTTGACAGAGCCTCGCGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAATGGATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGACCTGAGGAATGA 459 0.4336 MXNETELLQVGEMDVYPLVVKADASPSNTNGSDETTTSNTRNSQITQAVFEKEKGEFRVKVVKQILWANGMRYELQEIYGIGSSTETGADESDQGKECVICLTEPRDTIVHPCRHMCMCNGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1811 152 SUPERFAMILY RING/U-box 97 143 - -
Amo16g1811 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 2 151 - -
Amo16g1811 152 MobiDBLite consensus disorder prediction 23 42 - -
Amo16g1811 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 147 IPR013083 -
Amo16g1811 152 ProSiteProfiles Zinc finger RING-type profile. 98 137 IPR001841 -
Amo16g1811 152 MobiDBLite consensus disorder prediction 22 42 - -
Amo16g1811 152 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 97 137 IPR045195 -
Amo16g1811 152 Pfam Zinc finger, C3HC4 type (RING finger) 96 142 - -
Amo16g1811 152 PANTHER MAHOGUNIN 2 151 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1811 Amo-Chr16 40494837 40495530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1811 12 148 C3H Transcription Factor Family AT3G06140 56.115 1.65e-48 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1811 - - aprc:113862864 256.529