Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1807 ATGTTAAAAAATGGAAAATCAAAATCACATGTATACACTTACAGCCCTACCAACTACAGAGTTCCAAATGCCATGTTCCTCTCCCACCGCCGCGATGCAGCGCTCCGCTTCACGTCCTCCGCCGCCACTACTGCTACCGACGCCGACATTGGGCCGCCAGGGGTTGTCTCCAGAGTTTCTTCCGTCACCGCCGGACCTAACTCTTCCTCCGCATCCCACTTGCTTCAAGCTTCTTCTTGGCCTGCTGCCATCGCCGCCGCTGCCGCTGCCGCAAATGGTGGCTCCCCCGCGCTCGACCTGAAACGCTCTTCTGAATCACTCTACTATCCAACCATTTTGGGTATCCCAAACACAGTTGGGCAAAGCGAAGCTTGGTATTCTACAAACTCACTAGCTAAGCGCCCTAGATATGAAAGTGGAAGCAATTTGCCTATATATCCCCAGAGACCAGGAGAGAAGGATTGTGCCCACTATATGCTTACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGACGGTGGAATACCAGATTGGAAAGAGATTTCAAACACTGTTTCGAGTGAAACACTTCCTGAGAGAATAGGAGAACCAGACTGTCCATACTTTATTAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAGTTTAATCATCCAAGATCTTCTGAAAATGGTGATATTTCTGCCTTACCTGAGAGGCCATCAGAGCCCCTCTGTGCGTTCTATGTGAAGACTGGGAGATGTAAATTTGGTGCTACTTGTAGATTCCATCACCCGAAAGACATCCAGATTCTGACGTCTGATGAACTGAGTTATAATGCTGAACAAACACAAGAAAATTCCATAAGGGAGGGAGCAACAGGAGATACACAATCTTTCTTATCTCCACTATTGCATAATAGCAAAGGACTTCCAGTAAGAATGGGGGAAGTTGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCTACATGCCGCTACAACCATCCTGACAGGAATGCAATTTATCCGTCAGTTGCTGCATTTGGTTCTTCTATGGTGACGTCTATGGCTGCTAATCTAAGTATTGGATCTATAAATCCTTCTGTACCTATTTATCAAGCATATGACCCAAGGTTGTCAAATCCAATGTCTCAACTTGGAGTGGCAGAAATTATGTATCCTCAGCGTCCTGGACAGATTGAATGTGATTTCTATATGAAAACTGGTGAGTGCAAATTCGGGGAAAGATGCAAGTTCCATCACCCTCTTGACCGATCAGCAACATCAAGCATTAAGCTCACTCCCGCAGGATTACCTAGGAGAGAGGGTGTTAGCATCTGTCCGTATTACATGAAAACTGGCACTTGCAAGTTTGGTGCGACCTGTAAGTTTGACCACCCGCCACCCGGAGAAGTTATCGAGATAGCAAAATCGCAAGGAACATCCGCAACTGATGGAGGGGAAGCAGATTCATGA 1491 0.4594 MLKNGKSKSHVYTYSPTNYRVPNAMFLSHRRDAALRFTSSAATTATDADIGPPGVVSRVSSVTAGPNSSSASHLLQASSWPAAIAAAAAAANGGSPALDLKRSSESLYYPTILGIPNTVGQSEAWYSTNSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPDGGIPDWKEISNTVSSETLPERIGEPDCPYFIKTQRCKFGSKCKFNHPRSSENGDISALPERPSEPLCAFYVKTGRCKFGATCRFHHPKDIQILTSDELSYNAEQTQENSIREGATGDTQSFLSPLLHNSKGLPVRMGEVDCPFYMKTGSCKYGATCRYNHPDRNAIYPSVAAFGSSMVTSMAANLSIGSINPSVPIYQAYDPRLSNPMSQLGVAEIMYPQRPGQIECDFYMKTGECKFGERCKFHHPLDRSATSSIKLTPAGLPRREGVSICPYYMKTGTCKFGATCKFDHPPPGEVIEIAKSQGTSATDGGEADS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 318 342 IPR036855 GO:0046872
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 402 429 IPR036855 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 427 IPR000571 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 268 IPR000571 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 448 473 IPR000571 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 317 341 IPR000571 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 175 IPR000571 GO:0046872
Amo16g1807 496 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 228 IPR000571 GO:0046872
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 241 269 IPR000571 GO:0046872
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 449 473 IPR036855 GO:0046872
Amo16g1807 496 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Amo16g1807 496 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Amo16g1807 496 SMART c3hfinal6 446 473 IPR000571 GO:0046872
Amo16g1807 496 SMART c3hfinal6 241 268 IPR000571 GO:0046872
Amo16g1807 496 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Amo16g1807 496 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 206 229 IPR036855 GO:0046872
Amo16g1807 496 Gene3D - 400 487 - -
Amo16g1807 496 Gene3D - 148 236 - -
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 446 474 IPR000571 GO:0046872
Amo16g1807 496 Gene3D - 237 352 - -
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 150 176 IPR036855 GO:0046872
Amo16g1807 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 85 485 - -
Amo16g1807 496 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Amo16g1807 496 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 485 IPR045877 GO:0003729
Amo16g1807 496 SUPERFAMILY CCCH zinc finger 244 269 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1807 Amo-Chr16 40248980 40260530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1807 444 485 C2H2 Transcription Factor Family AT3G02830 48.837 7.90e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g1807 zf-CCCH 2.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1807 - - gmx:100801417 695.656