Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1803 ATGCTTAGTGTTATGGGTTTGTTGTTGCTGCCGATGGATTCGGTAGCGTGCAGGGGGTTGCTTTACGCGCTCTTTATACTCAACTTTGTTTTGGTTTGCCAACTCATTCTCCTTCAGCCTCTAGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGAGTTATTTGATAAGGTATCAGAAAGTATAAAAGTTAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCCATAGAAGCAGACCCAAATCTTTCAGAAGCATATCTATTCCGTGCATCAGTTCTTCGTCAATTGTGCAGATATGAGCAATCCGAGGGGAGCTACAAGAAGTTTCTGGAGCTCAAACCTGGACATTCAACTGCAGAAAAGGAGCTCTCCCAGCTATTGCAGGCTAAGAGTGCCCTAGAAACAGCTCAGTCCCTTTTTGGTTCAGGAAACTTCATAAAATCTTTAGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCATCGAGGCTAAGCTACTGAAAGTGAAGTTATTGATAGCTGATAAAGAGTATGAAAATGCCATAGCTGAGTCTGGATTCCTTCTTAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTGCGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACCAGGCATTACCAGAAAGGCCTCCGCCTGGATCCAGAGCACAGTGAATTAAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGACAAAAAGTGCTGAAGATAATGCAAATAAGGGTAAACTCCGTGTGGCAGTGGAGGAATTCAAAACTGCACTTGCAGTTGACCCTGATCATCTTGCACATAATGTTCATCTTCATCTAGAATTATGTAAAGTCCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAATGAAGCTCTTAAAATCAATGAGGAGCTTCTTGAAGCCCTTGTTCAGAGGGGAGAAGCCAAACTTCTAATAGAGGATTGGGAGGGAGCTGTTGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGACATGAATATCCGTGAAGCAGTAATGAGGGCTGAGAAAGCTCTAAAGCTGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATCTCAAAAACAGCTTCCGCCCCTGAGATAAAACGCGCATACAAGAAACTTGCTTTGCAATGGCACCCGGATAAGAATGTAGAAAACAGGGAAGAAGCAGAGGCTAAGTTCCGAGAAATCGCTGCAGCATATGAGGTACTTAGTGACGAAGACAAACGCACAAGATACGATAGAGGGGAGGACCTTGAAGACATGACCAGTGGCGGGGGTGGTGGGTTCAATCCATTTGGTGCCGGTGGGTTTGGTGGACAGCAGTATCACTTCACATTCGAAGGTGGCTTTCCCGGTGGTGGTTTCGGAGGAGGCTTTCCCGGGGGTGGGGGATACGAGTTCCATTTTTGA 1479 0.4341 MLSVMGLLLLPMDSVACRGLLYALFILNFVLVCQLILLQPLVSASGGKSGNAAELFDKVSESIKVKHYTEALDDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSEGSYKKFLELKPGHSTAEKELSQLLQAKSALETAQSLFGSGNFIKSLEYIDKVVLVFSPACIEAKLLKVKLLIADKEYENAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNANKGKLRVAVEEFKTALAVDPDHLAHNVHLHLELCKVLVKLGRGKDALDSCNEALKINEELLEALVQRGEAKLLIEDWEGAVEDLKSAAQKSPQDMNIREAVMRAEKALKLSKRKDYYKILGISKTASAPEIKRAYKKLALQWHPDKNVENREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEDMTSGGGGGFNPFGAGGFGGQQYHFTFEGGFPGGGFGGGFPGGGGYEFHF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1803 492 SMART tpr_5 285 318 IPR019734 GO:0005515
Amo16g1803 492 SMART tpr_5 201 234 IPR019734 GO:0005515
Amo16g1803 492 SMART tpr_5 86 119 IPR019734 GO:0005515
Amo16g1803 492 SMART tpr_5 319 352 IPR019734 GO:0005515
Amo16g1803 492 SMART tpr_5 52 85 IPR019734 GO:0005515
Amo16g1803 492 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Amo16g1803 492 Gene3D Tetratricopeptide repeat domain 50 370 IPR011990 GO:0005515
Amo16g1803 492 Pfam Tetratricopeptide repeat 65 119 - -
Amo16g1803 492 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Amo16g1803 492 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Amo16g1803 492 SMART dnaj_3 372 431 IPR001623 -
Amo16g1803 492 Coils Coil 119 139 - -
Amo16g1803 492 CDD DnaJ 373 428 IPR001623 -
Amo16g1803 492 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Amo16g1803 492 PRINTS DnaJ domain signature 375 393 IPR001623 -
Amo16g1803 492 PRINTS DnaJ domain signature 393 408 IPR001623 -
Amo16g1803 492 PRINTS DnaJ domain signature 411 431 IPR001623 -
Amo16g1803 492 PRINTS DnaJ domain signature 431 450 IPR001623 -
Amo16g1803 492 Coils Coil 409 429 - -
Amo16g1803 492 SUPERFAMILY Chaperone J-domain 367 475 IPR036869 -
Amo16g1803 492 Pfam DnaJ domain 373 436 IPR001623 -
Amo16g1803 492 SUPERFAMILY TPR-like 66 368 IPR011990 GO:0005515
Amo16g1803 492 Gene3D DnaJ domain 371 481 IPR036869 -
Amo16g1803 492 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 492 IPR044620 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1803 Amo-Chr16 39800225 39805271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1803 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 2.47e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1803 K09523 - gmx:100804685 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1803 16 39800225 39805271 Amo16g1803 16 39800225 39805271 ECH