Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1793 ATGGACAAGGATACTAGTTTGGAAATCCATCTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAAGAGTTAATTGTTCACTATCTAAGAAACAAAGTCACTTCTTCACCACTTCCTGCCTCATTCATAGCAGAGATAGACCTCTACAAGTTCAATCCATGGGAGCTTCCAAGCAAAGCTTTGTTTGGGGAAGAAGAGTGGTATTTCTTTACTCCAAGAGAGAGGAAGTACCCAAATGGAGTGAGACCAAACAGAGCAGCTGGTGCAGGTTACTGGAAGGCCACTGGAACTGACAAACCAATTATCACGTCATGTGGTATGAAGAGCATTGGAGTGAAGAAAGCCCTTGTCTTCTACAAGGGACGTCCCCCAAAGGGATCCAAAACTGATTGGATCATGCATGAGTATAGGTTGCATGATTCACTCCTCTCAAATTCTCACAAAAGAGGCTCCATGAGACTTGATGAGTGGGTGCTATGCCGGGTGAGACAGAAAACAGGCAGCCCAAGAAGCACTTTYGAAGATCCAAGTGAACTYKTTTATGAACCAACAAAAAAGATTCAACAAATGAATGATGAGAACTTCAATCCTGAACTAGTAAAAGCCTCCATTGTGCACAACGAATTTCCAATGTTACCTTATATTCTGGCTTCTAGGAGTACTTTGCCTAATTCCATTGGTGTGTCCTCAAGCACAGGCTTTGTTAGAAATTYTGATATGAAAWAATATGGTTCAGTGCATGAAGACAACAACTTGAATGTAATAGGAGCACAGTTCTTAGCATCTGCAATGGAGGGCTTGTATAATAATCCTTTGAAGAGAAAATTCATTGAAGAAGAAGAAAACCATTTGGAATATGCTCCCCCAAATAAGAAAATAAGCCTAGAACTTGGTGATGATGTTGATAATAGTGATGATAAGCCAAGTCTTGTGATGGATACAAACAAAGGCTACAATTTTGGCTTCTTTGATCAGTGGAATTCAATCATACAACCTCAAGAGCTTAACAGCTTAGCCTTCATGGGATATTCATGA 1035 0.4039 MDKDTSLEIHLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKFNPWELPSKALFGEEEWYFFTPRERKYPNGVRPNRAAGAGYWKATGTDKPIITSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSLLSNSHKRGSMRLDEWVLCRVRQKTGSPRSTFEDPSELXYEPTKKIQQMNDENFNPELVKASIVHNEFPMLPYILASRSTLPNSIGVSSSTGFVRNXDMKXYGSVHEDNNLNVIGAQFLASAMEGLYNNPLKRKFIEEEENHLEYAPPNKKISLELGDDVDNSDDKPSLVMDTNKGYNFGFFDQWNSIIQPQELNSLAFMGYS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1793 344 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 298 - -
Amo16g1793 344 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Amo16g1793 344 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Amo16g1793 344 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Amo16g1793 344 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Amo16g1793 344 PANTHER NAC TRANSCRIPTION FACTOR 56 2 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1793 Amo-Chr16 38939052 38942774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1793 10 174 NAC Transcription Factor Family AT1G61110 69.942 1.55e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g1793 NAM 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1793 - - gmx:100788799 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1793 16 38939052 38942774 Amo16g1793 16 38939052 38942774 ECH