Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1784 ATGCGTTTGCTCCTTTCGTCGTCACACGAGCTCTCTCGGCCGTGCTCTTGTCTTACGAGCTCCCTCCGCCACCGCTCTCGCGCTGTTTCTTCTCTTCTCGCCAGAGGTTACACCATTTATGGTCGAGTGAAGATCCCCAGCAATTTAGGAACAAAAGACTATATAATTCCCGGAAAAGTGTCGAATGTCAAAGTCATACTCAATGGTGGTCAGAAAGGCCAGGGGGACAAGGCTATTTGTGGAAACAAAACTAGGACGAATTCGAGTTTTCAAGCGGCCGCAAAGCAGGCGATTTTGGAAGTAGTTCAAGCTGCACCAAACAGCATAGGATGCTATGCAAGAGGGAAGGTTGATATTTCTGAAAGGCCTCACACAGTTAATGATTACTTGCAGGGTCCACCACTGGCTGGAAGGTATGACATGGGAGCTCTATGCATGCATGAGAATTTTGAAAAACTTGAAGGCCTTATCAATGATGCTATAGATAAAGGTGCTGAAATTGTTGCAAGAGGAAGTTTCGGGCCTATTGGTGGAGATGCAGTTGATCAGTGTTACCCCTCAACTGTGATTGTTAATAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAAGGATTAGCTCAGAGTGTGCCGTTCTGACAGATAGCAGGGATTCAATTCCAATTCAAAAATGGAAGTCAATTAACGCTCAGGTGGTTATTGGGACTCCTGGCACCATCAAGAAGTGGATTTCTTTCAAGAAATTGAACCTGACCAGATTGACGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTAAGGTTCTTCTATTTTCTGCCACATTCAACGACATTGTCAAGAACTTTGTTGAGAGGATATATAAAGTGCACTGCCCTGATGAGTTGTCGAAGATTGAGATTTATCAATTCAATGGAGCTAATTCAAATAAGATTTATGGTTATGATGAAAGAGCCAAGGCTTTGGAAGTTATCCAGTATCTGAAGGAAAAGTATCATGAAGGGAAGTGTAATGTTGCCATTGTTGATGATGGAAAGTTGGACACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCAATTGGAAAGAAAGGAATTAGTGATGATGATATCATTCCTGAGACAACTCCTGCCCAACTCTTTAGATTTTACCAGCAGATGCTTGTGCTGGGCATACATAAGGGAATCTTGATTAGAACTAAGTATTTGGACTGTGGTGCTGAGGTATTCGTCTGGGTTGGCCGGGTCACACAAGTTGAAGAGCGAAAAGCAGGTTGTCTTGCAGCTGAAAATTTTTGTTATCCATTATACTTCTGTTTGCCTAAATGGTTACTTCAAGATGAAGTCATTCACCAGTTGGCTAAATGA 1383 0.4295 MRLLLSSSHELSRPCSCLTSSLRHRSRAVSSLLARGYTIYGRVKIPSNLGTKDYIIPGKVSNVKVILNGGQKGQGDKAICGNKTRTNSSFQAAAKQAILEVVQAAPNSIGCYARGKVDISERPHTVNDYLQGPPLAGRYDMGALCMHENFEKLEGLINDAIDKGAEIVARGSFGPIGGDAVDQCYPSTVIVNNTEVLRKMGKHTRISSECAVLTDSRDSIPIQKWKSINAQVVIGTPGTIKKWISFKKLNLTRLTILVFDEADQMLAKVLLFSATFNDIVKNFVERIYKVHCPDELSKIEIYQFNGANSNKIYGYDERAKALEVIQYLKEKYHEGKCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKGISDDDIIPETTPAQLFRFYQQMLVLGIHKGILIRTKYLDCGAEVFVWVGRVTQVEERKAGCLAAENFCYPLYFCLPKWLLQDEVIHQLAK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1784 460 Gene3D Severin 289 375 IPR029006 -
Amo16g1784 460 SUPERFAMILY ALDH-like 126 178 IPR016161 GO:0016491
Amo16g1784 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 288 IPR027417 -
Amo16g1784 460 Pfam DEAD/DEAH box helicase 194 293 IPR011545 GO:0003676|GO:0005524
Amo16g1784 460 SUPERFAMILY Actin depolymerizing proteins 290 390 - -
Amo16g1784 460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 294 IPR014001 -
Amo16g1784 460 PANTHER BNAA03G19590D PROTEIN 298 437 IPR030009 GO:0051015|GO:0051017
Amo16g1784 460 PANTHER VILLIN 298 437 IPR007122 GO:0051015
Amo16g1784 460 Gene3D - 185 288 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1784 Amo-Chr16 38566307 38570622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1784 132 236 Aldehyde Dehydrogenase Gene Family AT3G66658 39.844 1.19e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1784 - - aip:110266256 298.901