Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo16g1765 | ATGCCGCCTAAGCAGCAATCTAAAGCTGATTTAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAAAATGTTCAGAAATATGTTCAGAACCTCAAGCAATCCGTACAACCCAAACCCGATCCTTCCAAAACCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGCTGAATGAATTGTTCAAGATAGCTGTTACCCAACCCAAAGTCCCTGTTGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTCAAGGTTGGACAATGTGCTAAGGGCTTCAAGTGCAAGTTCTCGCATGACTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATCTATAGTGATAAGCGTGATCAGGAAGACACGATGGAGGATTGGGATCAAGAGACTTTGGAGAAGGTAGTGGAGTCGAAGAAAACTGAATACAATCAGAACAAACCAACTGATATTGTATGTAAATACTTTTTGGATGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGTCCCAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCCGGATATGTTTTAAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAAGAGAAAAACTAACAATTGAAGAGGAGATAGAAAATCAGCGTGCTAAAGTGGCAACTACAACTCCTATGACTCCTGAATTATTCATGCAATGGAAGAAGAAGAAAATAGAAGAAAGAGATGCCAATTTGGCTTTACAGCAAGCTGAGAGGGCCAAGAATGACCGTATGAGTGGTCGTGAGCTATTTTTGGCAGATGCTAGCGTGTTTGTGGATGATGCTGAAGCATATGAGAAGTATCAAAGGGAACCCGAATCCGATGACTCTGAACAGAAGGTCAATGGGAATGCTGCTCAAGACGGTCCCAGCACGTCCACAGTTAGTGTTGATGCTGAGGATACTGATGTTGATGTGGATGACGACGACGATGATGAACTGGACATGGATGAGTTGAATGAATTGGAAGCAAGCTTATCAAGGACATCAATCCAAATAAAGGAGTAA | 1080 | 0.4259 | MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPSKTAAKKKKEEEKAKDKELNELFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQEDTMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEREKLTIEEEIENQRAKVATTTPMTPELFMQWKKKKIEERDANLALQQAERAKNDRMSGRELFLADASVFVDDAEAYEKYQREPESDDSEQKVNGNAAQDGPSTSTVSVDAEDTDVDVDDDDDDELDMDELNELEASLSRTSIQIKE* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo16g1765 | 359 | Pfam | DRG Family Regulatory Proteins, Tma46 | 216 | 297 | IPR032378 | - | |
| Amo16g1765 | 359 | Coils | Coil | 247 | 267 | - | - | |
| Amo16g1765 | 359 | MobiDBLite | consensus disorder prediction | 40 | 64 | - | - | |
| Amo16g1765 | 359 | PANTHER | ZINC FINGER-CONTAINING PROTEIN P48ZNF | 1 | 359 | - | - | |
| Amo16g1765 | 359 | MobiDBLite | consensus disorder prediction | 324 | 339 | - | - | |
| Amo16g1765 | 359 | Coils | Coil | 202 | 229 | - | - | |
| Amo16g1765 | 359 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 | 1 | 359 | - | - | |
| Amo16g1765 | 359 | MobiDBLite | consensus disorder prediction | 291 | 339 | - | - | |
| Amo16g1765 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 159 | 197 | IPR000571 | GO:0046872 | |
| Amo16g1765 | 359 | Gene3D | - | 87 | 205 | - | - | |
| Amo16g1765 | 359 | MobiDBLite | consensus disorder prediction | 303 | 323 | - | - | |
| Amo16g1765 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 115 | IPR000571 | GO:0046872 | |
| Amo16g1765 | 359 | SUPERFAMILY | CCCH zinc finger | 88 | 113 | IPR036855 | GO:0046872 | |
| Amo16g1765 | 359 | Gene3D | - | 206 | 280 | - | - | |
| Amo16g1765 | 359 | SMART | c3hfinal6 | 88 | 114 | IPR000571 | GO:0046872 | |
| Amo16g1765 | 359 | SMART | c3hfinal6 | 159 | 196 | IPR000571 | GO:0046872 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Amo16g1765 | DFRP_C | 8.5e-18 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo16g1765 | - | - | gmx:100806617 | 585.104 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo16g1765 | 16 | 37005643 | 37010833 | Amo16g1765 | 16 | 37005643 | 37010833 | ECH |