Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1756 ATGGCGGCAGCAGCAGCTCGTCCCATCGTCACCGTTCAAGCCCTTGAGGGCGACATGGCCACCGACTCCGCCSCAACCGTACCACTTCCTGACGTCATGAAGGCCTCCATCCGCCCTGATATCGTCACCTTCGTCCACGACAACATCTCGAAGAACTCTCGCCAGCCCTACGCCGTCTCCCGTCGTGCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACTGGCCGTGCCGTCTCGCGTATCCCTCGTGTTCCTGGCGGTGGTACTCACCGTGCCGGTCAGGGAGCCTTCGGAAACATGTGTCGTGGCGGCCGCATGTTCGCTCCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGAGGTTCGCCGTCGTGTCCGCCATCGCCGCCTCCGCGGTCCCYTCCYTGGTCCTTGCCCGCGGTCACCGKATCGAGTCCGTACCCGAGCTCCCTCTCGTCGTCAGCGACACCGTTGAAGGCGTCGAGAAAACGAAGGAGGCCCTCAAGGTTTTGAAGCAGATCGGAGCATTTCCCGACGCGGAGAAAGCCAAGGACAGCCACGGGATCCGCCCTGGGAAAGGGAAGATGAGGAACCGCCGCTATATTTCCCGCAAGGGACCTCTGATCGTGTACGGAACCGAAGGCGCTAAGGCCGTTAAGGCTTTCAGGAACATTCCCGGCGTGGAGGTCGCAAATGTGGAGAGGCTGAACCTTCTGAAGCTCGCTCCCGGTGGCCACCTCGGCAGGTTCGTGATTTGGACCAAGTCAGCGTTCGAGAAACTCGATTCGATCTATGGAACCTTCGAGAAGGCATCGGAGAAGAAGAACGGTTACGTTCTTCCAAGGTCAAAGATGGTGAATGCWGACCTGGCTAGGATTATTAACTCTGATGAGGTTCAGTCTGTTGTGAGGCCCATTAAGAAGGAGGTTAAGAGGGCCACTCTCAAGAAGAACCCTCTCAAGAACTTGAATGTGATGCTAAGGTTGAATCCTTATGCTAAGGCTGCTAAGAGAATGGCGCTTCTCGCTGAGGCACAGCGTGTTAAGGCTAAGAAGGAGAAGCTCGACAAGAAGCGCAGTACTGTTTCCAAGGAGGATGCTTCTGCTATCAGAGCTGCTGGAAAGGCTTGGTACCAAACCATGGTTTCTGACTCTGATTATGCCGAATTTGACAACTTCTCCAAGTGGTTGGGAGTTTCACAGTGA 1221 0.5643 MAAAAARPIVTVQALEGDMATDSAXTVPLPDVMKASIRPDIVTFVHDNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRFAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDTVEGVEKTKEALKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFEKASEKKNGYVLPRSKMVNADLARIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNVMLRLNPYAKAAKRMALLAEAQRVKAKKEKLDKKRSTVSKEDASAIRAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1756 406 Pfam 60S ribosomal protein L4 C-terminal domain 282 353 IPR025755 -
Amo16g1756 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
Amo16g1756 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Amo16g1756 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
Amo16g1756 406 Coils Coil 343 370 - -
Amo16g1756 406 Pfam Ribosomal protein L4/L1 family 27 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Amo16g1756 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Amo16g1756 406 SUPERFAMILY Ribosomal protein L4 22 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1756 Amo-Chr16 36937916 36939756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1756 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.266 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1756 K02930 - gmx:100779764 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1756 16 36937916 36939756 Amo16g1756 16 36937916 36939756 ECH