Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1745 GATCTCAATCGTTTCCTTCTTCCTTTCTTCTCCAGCGTCCGATTCCTCTCCCATTTCTCACCGGATCTCTCTCCCGCCAAATACAAAAATTCCATAAACATTTCCCAGCACCCAAACCAGGTATTTCAGGTTCCGGCGATCATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGAAGCCACGAGAGCGGTGACCATAGCCCTCGCTCCAACATAAGGGAGCAGGACAGGTTCCTTCCCATCGCTAACATCAGCCGCATCATGAAGAAGGCGCTTCCCGCCAACGGAAAAATCGCCAAGGATGCCAAAGAAACTGTTCAGGAATGCGTCTCCGAGTTTATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTCTCGGTTTCGAGGATTATATTGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGGGTGACACCAAGGGTTCAGCAAAGGGTGGAGACGCTTCTGCTAAGAAAGAGGTTCAACCAAGTCCTAATGTTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTACACTAACRCTCAGGTAATACTACTCTGTATAATGATTTGTGGTGGTTTTTGTTTTCATTTCCTGTTTTATCAAAAGAGGAAACAAATTTTTATTCTTTTCCTTTTTTACTATTTTCTTCTTGAATAA 726 0.4628 DLNRFLLPFFSSVRFLSHFSPDLSPAKYKNSINISQHPNQVFQVPAIMADGPASPGGGSHESGDHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDASAKKEVQPSPNVQLAHQGSFSQGVNYTNXQVILLCIMICGGFCFHFLFYQKRKQIFILFLFYYFLLE* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1745 241 ProSitePatterns NF-YB/HAP3 subunit signature. 108 124 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo16g1745 241 SUPERFAMILY Histone-fold 74 177 IPR009072 GO:0046982
Amo16g1745 241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 141 IPR003958 -
Amo16g1745 241 MobiDBLite consensus disorder prediction 46 70 - -
Amo16g1745 241 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Amo16g1745 241 PRINTS CCAAT-binding transcription factor subunit A signature 143 161 - -
Amo16g1745 241 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Amo16g1745 241 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 204 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo16g1745 241 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 48 204 - -
Amo16g1745 241 Gene3D Histone, subunit A 64 196 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1745 Amo-Chr16 36205970 36208786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1745 48 194 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.487 1.97e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo16g1745 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1745 K08065 - gmx:100798667 298.901