Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1726 ATGGGGAGAAAAGGAAATTGGTTTTCTTCTGTGAAGAAAGCTCTGAGTCCTGACTCAAAGGAGAAGAAAGAGAAATCAAAGAAGAAATGGTTTGGGAAGCAGAAGTTGCAGAGTTCAGGCTCATACCAGGAATCTGATAAAGCACCACCGCTTCTGCCACCAGAAGATGTTAAATTGGCTGATCTTGAAATTGAAAGCGGTCATGATCGTGTTGTTGAAGTTGCAACTGCTGCAGATGTTGAGGAACCTGTTCCTGCTGTTGCAGTTCAGGCACCAGTGGTTAGGGCTGAAGCTGCTACTACCAGTCATACGATTACTCGGTTCTCTGGCAAACCAAAGGAAGAAGTGGCAGCAATCAAGATTCAAACGGCTTTTCGGGGATACTTGGCAAGAAGAGCACTGCGGGCTTTAAGAGGACTGGTCAGATTGAAGTCATTGATGGAAGGGCCCATTGTTAAGCGCCAAGCGATAAGTACCCTTCGCTCTATGCAGACTTTAGCTCGTGTGCAAGGTCAGATTCGTTCTCGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGCGACAGCTCTTGCAGAAGCATGCAAAAGAGCTCGAGAGCATGCGGATTGGCGAGGAATGGGATGACAGCTTACAATCGAAAGAACAGATTGAAGCCAAGTTACTGGGCAAGTATGAGGCTGCTATGAGAAGAGAAAGGGCACTGGCTTATGCATTCACTCATCAGCAAAACGGGAAGAGCTCATCTAAATCTATGAATCCCATGTTCATGGATCCAACCAATCCTAGCTGGGGTTGGAGTTGGCTGGAACGATGGATGGCAGCTCGACCTTGGGAGAGCCGTGGCATGATGGATAAAGAGCTGAACGACCATTCATCCATAAAAAGCTCAAGCCGCAGCATTACCGCTGGGGAAATCAGCAAATCATTTGCTCGTTTCCAGCTAAATTCTGAAACGCACTCTCCAACGGCCAGCCAAAATCCCGGCACACCTAGCTTCCAGTCCCATTCGGCTCCTCCCAAGGCACCGGCTTCTCCAGCAGTTGCTAGGAAACTGAAGAAGGGGAGTCCAAAGGGCAGCTTGGTTTTGGAAGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGGTTTCGGAGGCACTCCATCGCCGGATCATCAGTGAGGGATGATGAGAGCCTTGCCAGCTCTCCATCAGTTCCAAGTTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCAAAGTCCATTAACCATGGAAAATGGGAAAACAAATAAGGGTTCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTTCCGGCTTCACCTGCCAGACCACCCCGGCGGCATTCAGGTCCCCCGAAGATAATAGAAAGCAGTTTAAATGCAGAATTCGCCGTGAGCAACGGTGCGGCCAGTTGA 1437 0.4892 MGRKGNWFSSVKKALSPDSKEKKEKSKKKWFGKQKLQSSGSYQESDKAPPLLPPEDVKLADLEIESGHDRVVEVATAADVEEPVPAVAVQAPVVRAEAATTSHTITRFSGKPKEEVAAIKIQTAFRGYLARRALRALRGLVRLKSLMEGPIVKRQAISTLRSMQTLARVQGQIRSRRIRMLEENQALQRQLLQKHAKELESMRIGEEWDDSLQSKEQIEAKLLGKYEAAMRRERALAYAFTHQQNGKSSSKSMNPMFMDPTNPSWGWSWLERWMAARPWESRGMMDKELNDHSSIKSSSRSITAGEISKSFARFQLNSETHSPTASQNPGTPSFQSHSAPPKAPASPAVARKLKKGSPKGSLVLEDDSKSMVSVQSDRFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKAKSRTQSQSPLTMENGKTNKGSFGTAKKRLSFPASPARPPRRHSGPPKIIESSLNAEFAVSNGAAS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1726 478 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Amo16g1726 478 SMART iq_5 113 135 IPR000048 GO:0005515
Amo16g1726 478 MobiDBLite consensus disorder prediction 390 437 - -
Amo16g1726 478 Gene3D iswi atpase 111 148 - -
Amo16g1726 478 PANTHER IQ-DOMAIN 5-RELATED 1 474 - -
Amo16g1726 478 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 474 - -
Amo16g1726 478 MobiDBLite consensus disorder prediction 318 464 - -
Amo16g1726 478 MobiDBLite consensus disorder prediction 318 340 - -
Amo16g1726 478 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Amo16g1726 478 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1726 Amo-Chr16 34788312 34791934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1726 1 478 IQD Protein Family AT5G03040 53.347 1.72e-151 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1726 - - gmx:100800080 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1726 16 34788312 34791934 Amo16g1726 16 34788312 34791934 ECH