Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1717 TGTTCGGGTGTAGATCAAGACTTTTTGGGTTTGAGTTGTTGTCGTTCGGGTGTAGATCAGGAATTCTTGGGTCCCCTCTGTGTTGTTGATGACCAGTTTGTTCCCAAGGTTGGAATGACTTTTAACACCCTTGAAGATGCTGCAAAATTTTACAAGGACTATGCCAAGGCCGCAGATTTTTCTACAAGAAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCCACAGCTGGTTTAAATTGTCCTGCAAGAATTTATATACACACATTGAAGGGTGTTGGTGCTTGGATCATTTTGAAGGTCGTGCTGCATCATTCACACCCTTGCTGTCCAACTCAAGCAGAGATGCTCAAACAGCACAGAAAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGGGATGAAAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTCAACAAGTTCATTACACGGAACAGCTCACTTATCCAATTTTTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAAATGCTACAGATTTTTATACGGTCATACTGTGTGCAACAAAATCTTCCATTGAAGCTCAGTTTCAAGAAGTAGGAAAGGCGAATTGCATCACAAGATTAACGAACTCCGCTCTAGGCTATTCAGTATACGAAGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACAACTCAGTACCAGCCCAAGTGAAATGCCAATGCTTATTATTCGAGTCAAGAGGCATATTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAACCCAAGTGTCACCGAGATATATATTGAAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGGTGTTTCGTTTTCGCAAAATATTTGCGAATTTGCATCATAATCGGAGGAGCTGA 1047 0.4231 CSGVDQDFLGLSCCRSGVDQEFLGPLCVVDDQFVPKVGMTFNTLEDAAKFYKDYAKAADFSTRNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKGVGAWIILKVVLHHSHPCCPTQAEMLKQHRKLSMSIRRTIENNEEAGMKSTQRSESMHSFFNKFITRNSSLIQFFKQYDNCLGSREQAERESNATDFYTVILCATKSSIEAQFQEVGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYNSVPAQVKCQCLLFESRGILCRHALSVLSFERVTQVSPRYILKRWSKKVKRRHTHIKSSHDEPLLEPRSKRFDELVFRFRKIFANLHHNRRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1717 348 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 138 IPR031052 GO:0006355
Amo16g1717 348 ProSiteProfiles Zinc finger SWIM-type profile. 252 288 IPR007527 GO:0008270
Amo16g1717 348 PANTHER OS03G0843700 PROTEIN 31 138 - -
Amo16g1717 348 PANTHER OS03G0843700 PROTEIN 152 317 - -
Amo16g1717 348 Pfam SWIM zinc finger 260 285 IPR007527 GO:0008270
Amo16g1717 348 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 152 317 IPR031052 GO:0006355
Amo16g1717 348 SMART 26again6 263 290 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1717 Amo-Chr16 34518804 34521176 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g1717 SWIM 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1717 - K17604 adu:107484182 325.094