Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1678 ATGGCATCTTCATTCTCAACTCAATTGCTGCAAAGTCAAATTCTACTTCCCCGTTTTCATCATCTCCAGGGGAAACTTAGCCAAGATGTGTCGATGGTTCGGAAGCCGCAGGTTGTCTGTAGCAGTATCGGATCACGGATTGGTTACAACCAAACACTGGCTTCAAGATCACACTATGCTGTGAGGTTTTCTGTCACACAACAATCTGAAGCAAAATCAATGAGATATAGGAGAATGACATGCATGAACGTCACTGAAAGTGAGCTGCTAGCCAAAGTGACAACTAAGTGCTTCTTCGATGTACAAATTGCGGGTGAACCTGCTGGCAGGATTGTTTTTGGTTTGTTTGGGGACGTCGTTCCTAAAACAGCTGAGAATTTTCGAGCTTTGTGCACAGGAGAGAAAGGATATGGCTATAAAGGATCCTACTTCCATCGTATAATCAAAGACTTCATGATTCAAGGCGGGGACTTCACCGAGGGAAATGGAACCGGTGGAGTTAGTATCTATGGTTCTCGTTTTGAAGATGAGAATTTTAACTTGAAGCATGCTGGTCCTGGAATTTTGAGTATGGCAAATGCTGGTCCTGATACCAATGGCAGTCAGTTTTTTATTTGCACCGTACCGACACCATGGCTAGACAATCGCCATGTCGTGTTCGGACAAGTCATTGATGGAATGGATGTTGTGAAGACTCTCGAGTCACTGGAGACGAGCCAGCGTGATAACAGCCCCAAGAAAGCAAGCAAAATCGCTAATTGCGGTGAACTGCCTCTTGATGGTTGA 786 0.4478 MASSFSTQLLQSQILLPRFHHLQGKLSQDVSMVRKPQVVCSSIGSRIGYNQTLASRSHYAVRFSVTQQSEAKSMRYRRMTCMNVTESELLAKVTTKCFFDVQIAGEPAGRIVFGLFGDVVPKTAENFRALCTGEKGYGYKGSYFHRIIKDFMIQGGDFTEGNGTGGVSIYGSRFEDENFNLKHAGPGILSMANAGPDTNGSQFFICTVPTPWLDNRHVVFGQVIDGMDVVKTLESLETSQRDNSPKKASKIANCGELPLDG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1678 261 SUPERFAMILY Cyclophilin-like 88 257 IPR029000 -
Amo16g1678 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 52 260 - -
Amo16g1678 261 CDD cyclophilin_ABH_like 96 255 - -
Amo16g1678 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 98 256 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 52 260 - -
Amo16g1678 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 139 156 IPR020892 GO:0003755|GO:0006457
Amo16g1678 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 156 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 202 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 214 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 215 230 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 255 IPR002130 GO:0000413|GO:0003755
Amo16g1678 261 Gene3D - 84 260 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1678 Amo-Chr16 33020010 33023476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1678 109 242 U-box Gene Family AT5G67530 46.667 1.08e-30 118