Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1654 ATGAGTCAGATGAAGAGAGAAATAGATCAAATAGACTTGGCGAATTGCCTTATGCTTCTCTCTAATAATCCAATAATTAGAAAGAAAAGAAGCCTCAATAACAATGGTGAAGTGGAATTCGAGTGCAAGACATGTAACCGCAAGTTCCCATCGTTTCAAGCACTTGGAGGCCACAGAACAAGCCACAACAAGAAGCCAAAGCTGGAATCAGAACCCAACAACAACGTTGATACTAAGCCGAAGATGCACGAGTGCTCCATTTGTGGCCAAGAATTCTCTCTTGGTCAGGCACTCGGAGGCCACATGAGAAGGCACAGATCACAAAATGATCAACATCAACAACTTGTGTCTTCTATGAATGAGATTAAACATGTTGTTGCTAAAGTTCCGGTTTTCAAGAGATCTAATAGTCTAAGGGTTAGTTGCTTGGACTTGAACCTAACACCATTGGAGAATGATTTGAAGGTGCTCTTTGGAAGTATTACTCCTAATAATAAGCTTCATGCCTTAGTTTGA 516 0.407 MSQMKREIDQIDLANCLMLLSNNPIIRKKRSLNNNGEVEFECKTCNRKFPSFQALGGHRTSHNKKPKLESEPNNNVDTKPKMHECSICGQEFSLGQALGGHMRRHRSQNDQHQQLVSSMNEIKHVVAKVPVFKRSNSLRVSCLDLNLTPLENDLKVLFGSITPNNKLHALV* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1654 171 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Amo16g1654 171 MobiDBLite consensus disorder prediction 53 77 - -
Amo16g1654 171 MobiDBLite consensus disorder prediction 62 77 - -
Amo16g1654 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Amo16g1654 171 PANTHER ZINC FINGER PROTEIN ZAT5 10 164 - -
Amo16g1654 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 105 IPR036236 -
Amo16g1654 171 SMART c2h2final6 83 105 IPR013087 -
Amo16g1654 171 SMART c2h2final6 40 62 IPR013087 -
Amo16g1654 171 Gene3D Classic Zinc Finger 33 120 - -
Amo16g1654 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Amo16g1654 171 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 164 - -
Amo16g1654 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Amo16g1654 171 Pfam C2H2-type zinc finger 83 108 - -
Amo16g1654 171 Pfam C2H2-type zinc finger 40 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1654 Amo-Chr16 32097885 32098591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1654 2 159 C2H2 Transcription Factor Family AT2G37430 47.619 1.40e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g1654 zf-C2H2_6 5.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1654 - - gmx:100527151 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1654 16 32097885 32098591 Amo06g1012 06 14099578 14100273 hybridization
Amo16g1654 16 32097885 32098591 Amo12g1055 12 27962287 27963218 PCT
Amo12g1055 12 27962287 27963218 Amo16g1654 16 32097885 32098591 PCT