Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1633 ATGGCGGCATCGCGGCGGTTGCGGGAACTGCAATCCCAGGCGGCGAACAAGATCTGCGTCGACTGCTCTCAGAAGAACCCACAGTGGGCCTCCGTCTCCTACGGCGTATTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTGGGCGTCCACATCTCCTTCGTCAGATCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGCGGCAACGACGCCCTCAACGCCTTCCTCTCTCAGTACGGTATTCCAAAGGAAACTGATATTGTCACAAAGTACAACACCAACGCCGCCAAAATCTACCGCGACCGCATCCAGGCCCTCGCCGAAGGCCGTCCCTGGCGCGATCCTCCCGTTGTTAAGGAGGATCTCCGCTCCTCTGCCGGGAAACCTCCCTTGTCGCACACCGGCGGTGGCGGTGGTGGTGGAGGTTGGGATAGCTGGGATAACGATGACGGTTTTGGATCTCGCAATGATATGCGGCGGAATCAGTCGACTGGAGATGTTAGACGGTTCTCTGGTGGCGGCGCCGGTGTAGGTGGTGTGCCGGCGAGGTCGAAATCGACGGAGAATATGTACACGCAGTCGGAATTGGAGGCCTCCGCCGCGAACAAGGAGAGCTTCTTTGCTCGGAAGATGGCGGAGAATGACACGAGGCCTGAGGGGCTCCCGCCATCGCAGGGCGGAAAGTACGTCGGGTTCGGATCGAGCCCTGCCCCTTCGCAGAGGAACATAAACCCTCAAAACGACTATCTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCATTGGTTGCTGCATCTGCCGCTCAATCTGCTGCTAGTGTTGTTCAGGCAAGCACCAAGGAAATCACTGCTAAGGTAAAGGATGGTGGGTATGATCACAAGGTCAATGAAACTGTCAATGTTGTTACTCAGAAGACATCTGAGATTGGCCAAAGGACATGGGGCATTATGAAAGGTGTCATGGCATTGGCTACACAGAAGGTGGAGGAGTTCGCTAGAGATAACCCAAATTGGAAGCCTGAAAATTGGCAAGCAAATGATATAGATAGAAATGGTTCCTATCAAGAGTACAATCAAGAGAATAGAGGCTGGAATTCTTCTTCTACCAGGGGAGGACAACCATCATCGGGTAGTCAATCTAATAAGTCTAGTTCTTGGGATGATTGGGATGAGCAAGATTCTAGGAAGCAAGTACCAGCTCGTCCATCTTCACGTGAACAATATGGTGGTACCAAAAACACAAGCTCTTGGGATGATTGGGACCAAAATGATACTAGGAAGCAGGGACCAGCTAAGGTATCAGCTTCTCCATCACCAGTAGCACAGTATGTTGGTACTCACAACAGAAGCTCTTGGGATGATTGGGACCAAAAAGATACTAGGAAGCAAGAACCAGCTAAAGTATCTGCTTCTCCGTCATCAGTTGGACAGTATGGAGGTACTCAAAACACCCACACCAGCTCCTGGGATGATTGGGACCAAAAAGATACTAGGAAGGAAGAACCAGCTAAAGGATCAACTCCTCAGAAAAGTGATGGTTGGGCTGGCTGGGATGATTCTAAAGATGATGGATTTGATAATTTCTATGGGAGTTCAGCTAATAATAAAGCTGCTGGTCATAATGGAAAGGCAGATTCAGCCTGGACGGGAGGAGGCTTTCTCTGA 1689 0.5139 MAASRRLRELQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDALNAFLSQYGIPKETDIVTKYNTNAAKIYRDRIQALAEGRPWRDPPVVKEDLRSSAGKPPLSHTGGGGGGGGWDSWDNDDGFGSRNDMRRNQSTGDVRRFSGGGAGVGGVPARSKSTENMYTQSELEASAANKESFFARKMAENDTRPEGLPPSQGGKYVGFGSSPAPSQRNINPQNDYLSVVSQGIGKLSLVAASAAQSAASVVQASTKEITAKVKDGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMALATQKVEEFARDNPNWKPENWQANDIDRNGSYQEYNQENRGWNSSSTRGGQPSSGSQSNKSSSWDDWDEQDSRKQVPARPSSREQYGGTKNTSSWDDWDQNDTRKQGPAKVSASPSPVAQYVGTHNRSSWDDWDQKDTRKQEPAKVSASPSSVGQYGGTQNTHTSSWDDWDQKDTRKEEPAKGSTPQKSDGWAGWDDSKDDGFDNFYGSSANNKAAGHNGKADSAWTGGGFL* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1633 562 MobiDBLite consensus disorder prediction 459 473 - -
Amo16g1633 562 CDD ArfGap_ArfGap1 3 117 - -
Amo16g1633 562 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Amo16g1633 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 487 562 IPR044519 GO:0005096|GO:0016192
Amo16g1633 562 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Amo16g1633 562 MobiDBLite consensus disorder prediction 394 408 - -
Amo16g1633 562 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
Amo16g1633 562 MobiDBLite consensus disorder prediction 366 562 - -
Amo16g1633 562 MobiDBLite consensus disorder prediction 474 496 - -
Amo16g1633 562 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Amo16g1633 562 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Amo16g1633 562 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Amo16g1633 562 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Amo16g1633 562 MobiDBLite consensus disorder prediction 366 393 - -
Amo16g1633 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 431 IPR044519 GO:0005096|GO:0016192
Amo16g1633 562 MobiDBLite consensus disorder prediction 118 196 - -
Amo16g1633 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 431 - -
Amo16g1633 562 MobiDBLite consensus disorder prediction 158 172 - -
Amo16g1633 562 MobiDBLite consensus disorder prediction 221 250 - -
Amo16g1633 562 MobiDBLite consensus disorder prediction 497 514 - -
Amo16g1633 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 487 562 - -
Amo16g1633 562 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Amo16g1633 562 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1633 Amo-Chr16 30853713 30857608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1633 5 138 C2H2 Transcription Factor Family AT4G21160 38.971 8.68e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1633 K12492 - gmx:100801306 686.797