Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1605 GATTTTCCTTTCAGCCATGCCTTACCCAGCTGTCTCAAGCCAACTACTAAATATAAAGGTTCCCAAGGATTTGATCGCTATCTTACTGTGAGAAGCAATGGTGGACTAAATCAAATGCAAACTGGTGTAAGTGACTGCTTACTTTCTTGTAAAGTCCTTATAGAGGAGAGGGAAGCTCATTTGAAAGCTCGGGGGTATTATAAGTGCAGCTGCATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGCAAGAGCCGTCAATGCTAATAGTTACCTATGAAGGAGAGCACAACCACCCTAAATTATCAACACAATCTGCAAACGCATGA 336 0.4375 DFPFSHALPSCLKPTTKYKGSQGFDRYLTVRSNGGLNQMQTGVSDCLLSCKVLIEEREAHLKARGYYKCSCMRGCPARKHVERCLQEPSMLIVTYEGEHNHPKLSTQSANA* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1605 111 Pfam WRKY DNA -binding domain 62 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1605 111 SUPERFAMILY WRKY DNA-binding domain 62 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g1605 111 ProSiteProfiles WRKY domain profile. 64 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1605 111 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 63 109 IPR044810 GO:0003700
Amo16g1605 111 Gene3D WRKY domain 39 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g1605 111 SMART WRKY_cls 61 103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g1605 111 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 63 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1605 Amo-Chr16 29936416 29937702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1605 64 108 WRKY Transcription Factor Family AT2G30590 82.222 1.17e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g1605 WRKY 9.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1605 - - gmx:100792310 100.138